Gene detail

Detailed information of BRAKERKREP00000023318.1 in Hydra viridissima

Genomic Location: not available for this species
NR annotation: WP_010929009.1, ferredoxin--NADP reductase [Bordetella parapertussis]
Species Hydra viridissima · all data for this species · gene families

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A9ES55	Ferredoxin--NADP reductase A OS=Sorangium cellulosum (strain So ce56) OX=448385 GN=sce7188 PE=1 SV=1
P28901	Flavodoxin/ferredoxin--NADP reductase OS=Shigella flexneri OX=623 GN=fpr PE=3 SV=3
P28861	Flavodoxin/ferredoxin--NADP reductase OS=Escherichia coli (strain K12) OX=83333 GN=fpr PE=1 SV=4

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0064075 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00175 all species →	NAD_binding_1	Oxidoreductase NAD-binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR051930 all species →	Family	Flavodoxin/Ferredoxin--NADP Reductase	Interproscan
IPR039261 all species →	Homologous_superfamily	Ferredoxin-NADP reductase (FNR), nucleotide-binding domain	Interproscan
IPR033892 all species →	Family	Ferredoxin--NADP reductase, bacteria	Interproscan
IPR001433 all species →	Domain	Oxidoreductase FAD/NAD(P)-binding	Interproscan
IPR017927 all species →	Domain	FAD-binding domain, ferredoxin reductase-type	Interproscan
IPR017938 all species →	Homologous_superfamily	Riboflavin synthase-like beta-barrel	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47878 all species →	OXIDOREDUCTASE FAD/NAD(P)-BINDING DOMAIN PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000104 all species →	Molecular Function	succinate dehydrogenase activity	Interproscan
GO:0003994 all species →	Molecular Function	aconitate hydratase activity	Interproscan
GO:0034599 all species →	Biological Process	cellular response to oxidative stress	Interproscan
GO:0042167 all species →	Biological Process	heme catabolic process	Interproscan
GO:0004324 all species →	Molecular Function	ferredoxin-NADP+ reductase activity	Interproscan
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00528	fpr; ferredoxin/flavodoxin---NADP+ reductase	EC:1.18.1.2 EC:1.19.1.1	Enzymes with EC numbers	-	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of BRAKERKREP00000023318.1 across 29 RNA-seq samples of Hydra viridissima. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

29Samples

21TPM > 0

7Conditions

455.2Max TPM

210.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole body	18	11	200.15	455.24
Whole	6	6	238.60	307.62
aposymbioic hydra M9 strain · aposymbioic hydra rep1	1	1	273.40	273.40
aposymbioic hydra M9 strain · aposymbioic hydra rep2	1	1	286.67	286.67
symbioic hydra M9 strain · symbioic hydra rep1	1	1	248.07	248.07
symbioic hydra M9 strain · symbioic hydra rep2	1	1	248.24	248.24
unannotated	1	0	0.00	0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR21134054	whole body	whole body	not recorded	not recorded	SRP392977	455.24
SRR21134055	whole body	whole body	not recorded	not recorded	SRP392977	408.89
SRR21134052	whole body	whole body	not recorded	not recorded	SRP392977	386.52
SRR21134066	whole body	whole body	not recorded	not recorded	SRP392977	344.91
SRR21134050	whole body	whole body	not recorded	not recorded	SRP392977	324.17
SRR21134057	whole body	whole body	not recorded	not recorded	SRP392977	318.92
SRR21134051	whole body	whole body	not recorded	not recorded	SRP392977	308.57
SRR21134059	whole body	whole body	not recorded	not recorded	SRP392977	285.44
SRR21134056	whole body	whole body	not recorded	not recorded	SRP392977	268.14
SRR21134064	whole body	whole body	not recorded	not recorded	SRP392977	258.88
SRR21134060	whole body	whole body	not recorded	not recorded	SRP392977	243.05
SRR21134053	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134058	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134061	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134062	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134063	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134065	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134067	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR10058806	Whole	Whole	not recorded	not recorded	SRP220397	307.62
SRR10058802	Whole	Whole	not recorded	not recorded	SRP220397	241.94
SRR10058803	Whole	Whole	not recorded	not recorded	SRP220397	222.65
SRR10058805	Whole	Whole	not recorded	not recorded	SRP220397	221.32
SRR10058804	Whole	Whole	not recorded	not recorded	SRP220397	219.35
SRR10058807	Whole	Whole	not recorded	not recorded	SRP220397	218.72
DRR048593	aposymbioic hydra M9 strain · aposymbioic hydra rep1	not recorded	not recorded	aposymbioic hydra rep1	DRP003902	273.40
DRR048594	aposymbioic hydra M9 strain · aposymbioic hydra rep2	not recorded	not recorded	aposymbioic hydra rep2	DRP003902	286.67
DRR048595	symbioic hydra M9 strain · symbioic hydra rep1	not recorded	not recorded	symbioic hydra rep1	DRP003902	248.07
DRR048596	symbioic hydra M9 strain · symbioic hydra rep2	not recorded	not recorded	symbioic hydra rep2	DRP003902	248.24
ERR13389755	unannotated	not recorded	not recorded	not recorded	ERP162636	0.00

Source: CnidoSite RNA-seq expression matrices (HVIRI_TPM, StringTie quantification over 29 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.