Gene detail

Detailed information of BRAKERKREP00000023366.1 in Hydra viridissima

Genomic Location: not available for this species
NR annotation: WP_012248623.1, MULTISPECIES: two-component system response regulator OmpR [Bordetella]
Species abbreviation HVIRI · all data for this species · gene families

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P0AA18	DNA-binding dual transcriptional regulator OmpR OS=Escherichia coli O157:H7 OX=83334 GN=ompR PE=3 SV=1
P0AA17	DNA-binding dual transcriptional regulator OmpR OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) OX=199310 GN=ompR PE=3 SV=1
P0AA16	DNA-binding dual transcriptional regulator OmpR OS=Escherichia coli (strain K12) OX=83333 GN=ompR PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004383 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00486 all species →	Trans_reg_C	Transcriptional regulatory protein, C terminal	Domain	Interproscan
PF00072 all species →	Response_reg	Response regulator receiver domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001867 all species →	Domain	OmpR/PhoB-type DNA-binding domain	Interproscan
IPR039420 all species →	Family	Transcriptional regulatory protein WalR-like	Interproscan
IPR011006 all species →	Homologous_superfamily	CheY-like superfamily	Interproscan
IPR001789 all species →	Domain	Signal transduction response regulator, receiver domain	Interproscan
IPR036388 all species →	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR016032 all species →	Homologous_superfamily	Signal transduction response regulator, C-terminal effector	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48111 all species →	REGULATOR OF RPOS	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000160 all species →	Biological Process	phosphorelay signal transduction system	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0000156 all species →	Molecular Function	phosphorelay response regulator activity	Interproscan
GO:0000976 all species →	Molecular Function	transcription cis-regulatory region binding	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0032993 all species →	Cellular Component	protein-DNA complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K07659	ompR; two-component system, OmpR family, phosphate regulon response regulator OmpR	-	Two-component system	ko02022	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.