Gene detail

Detailed information of BRAKERKREP00000023367.1 in Hydra viridissima

Genomic Location: not available for this species
NR annotation: WP_056323778.1, MULTISPECIES: aconitate hydratase AcnA [Achromobacter]
Species Hydra viridissima · all data for this species · gene families

Sequence

CDS

BRAKERKRET00000023367

ATGGTGACAATACCCAAAGCGCCAGCAGTGACGGCGTTAAGCGGTCAAACATTCTTGGAGTCCTTCATGCCGCACAATACCTTTGAAACGCTCAAGAATTTCAAAACCGGCAGCCAGTCCTGTCAGTTTTACTCTCTGCCGGCCCTCGGCAAATACTTGGGAGTAAATATTCAGCGGCTCCCTGTTTCTATTCGCATCGTCCTCGAATCGGTCCTACGTAATTGCGATGGCAAGAAGGTTACCGAAGCGCACGTACGCCAGCTCGCCCACTGGCAGCCCAATGCCAAACGCGAAGATGAAATTCCGTTTGTCGTCGCGCGAGTGGTATTGCAAGACTTTACCGGCGTTCCATTGTTGGCAGACATTGCCGCCATGCGGGCGGTCGCCAACAAAATGGCCAAAAATCCTAAGAGTATTGAACCATTGGTACCGGTCGACCTCGTCGTGGATCACTCCGTGATGATTGACTACTTCGGCACCCCGAATGCGTTGGACCTCAACATGAAGTTGGAATTTCAGCGCAACCAAGAACGCTATCAGTTTATGAAATGGGGTATGCAGGCGTTCGATACCTTTCGGGTGGTGCCGCCGGGCTTTGGCATCGTCCATCAAGTTAATTTGGAATATCTGGCGCGCGGCGTGCATCAAGATAAGAAGACCAAGGTCTACTACCCTGACTCGCTGGTAGGCACAGATAGCCACACGACCATGATTAACGGCATAGGCGTTGTAGGTTGGGGCGTGGGCGGCATCGAAGCTGAGGCCGGCATGCTGGGCCAGCCAGTGTATTTTTTGACGCCGGATGTCGTAGGGGTGGAGCTTAAAGGTAGCCTGCGCGGTGGGGTAACTGCTACCGACTTGGTACTGACGATCACCGAGATGTTAAGACGCGAAAAAGTGGTGGGCAAATTCGTAGAATTCTGTGGGGAAGGCACCGCCAGCCTTTCAGTAGCCGAACGGGCAACGATAGGCAACATGGCGCCTGAGTATGGGGCCACCATGGGCTTTTTCCCCGTCGATGCCCACACCGTCGAGTACTTCAAGAGCACGGGACGCACGAAAGAAGAAATCGCTGCCTTTGAGGCTTATTTCAAAGcgcaaaaaatgtttggcGTCCCTAAGGGCGCCGATATTAATTACACCAAGCTGCTTACGCTCGACTTATCCACTGTCGCGCCCTCATTAGCTGGGCCCAAGCGTCCGCAAGACCGCATCGAAATTGGCCACGTCAAAAATACCTTCATAGACCTCTATTCCAAGCCCATCGCTGAAAACGGCTTTAATCAACCGCGCGAAAAACGAGAACAAGTATTCACCACAAGCGCTGGCACCCAAATCAAGAATGGCGACATCCTTATTGCCGCTATCACGTCTTGCACCAACACCTCTAACCCGAGCGTGCTGTTGGCGGCTGGGTTGCTGGCCAAGAAGGCCGTGGAGGCCGGCCTTACCGTGCCCAAGCACATCAAGACCTCGCTGGCGCCGGGCTCGCGCGTAGTGAAGGAATACCTCAGTAAAACTGGCCTGCTCCCTTATCTGGAACAGTTGGGATTTCACGTCGCTGCCTATGGCTGCACAACCTGCATCGGCAACGCGGGCGATCTCACGCCGGATTTAAATGCAGCCATTATCGACAACGACTTGGTATGCGCGGCGGTTCTTTCGGGCAACCGCAACTTCGAGGCACGCATACATCCGAACATTAAGGCGAACTTTTTAGCGTCGCCCCCCCTCGTCGTCGCCTACGCGCTGGCAGGTACTGTCACGCGAGACCTGATGACAGAACCGGTAGGCCGGGGTAAGAAGGGTGACGTATGGCTCGGAGATATCTGGCCATCGAACCAAGAAGTGCAATCCCTACTGAAGTATGCCCTGAATCCGCAGGCGTTCCAGAATAACTATGGCCAAATTAAGACGCAGCCAGGGCAATTGTGGGAGCACATCAAAGGCGTATCGGGCGACATCTATAGCTGGCCTGAGTCCACCTATATTGCTGAGCCACCTTTTTTCAATGACTTTGAAATGACGCCAGCACCGATGCCGACGGTAAAGGGCGCTCGTGCGCTTGGCATCTTTGGCGATTCGGTAACCACTGACCATATTTCACCGGCTGGCTCCATCAAAGAAAGTTCTCCCGCAGGTAAGTGGCTTAAGCTGCATGGCGTCACTAAGGCGGATTTTAATAGCTACGGCTCGCGTCGGGGGAATCACGAGGTGATGATGCGCGGCACCTTCGCCAACGTACGCATCAAGAACTTGATGATTCCGCCGCTGCCTAACGGCAGCCGCTTCGAAGGCGGCGAAACCCTCTTTCAACCCAGCGGCGAACAGATGTCGATATACGACGCGGCAATGAAATACATCGCTCAGGGTACGCCCACCCTTGTCTTCGGCGGCGAAGAATATGGTACCGGCTCATCGCGCGACTGGGCGGCTAAAGGCACCCAGCTGTTGGGTGTCAAGGCCGTGGTCGCACGCAGCTTTGAGCGCATTCACCGTAGCAACTTAGTAGGGATGGGCGTGCTGCCCTTGCAATTTAAGGGCGACGATAGCGTACAGACGCTGGGTATAACGGGCGAAGAAACCTACGACATCGCTGGCTTAGAAAACGGCATCAGACCCATGCAGAACGTCACCTTAGTTATTCATCGCAAAGACGGTACCGTGCAAAACGTCACGGTGCTCTTGCGCATTGATACGCCCATCGAAGTCGACTACTACAAGCACGGTGGCATTTTGCCTTTTGTCTTGCGTCAACTGTTGGCTGCTTGA

Transcript

BRAKERKRET00000023367

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5SMF6	Aconitate hydratase A OS=Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8) OX=300852 GN=acoA PE=3 SV=1
Q9RTN7	Aconitate hydratase A OS=Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / CCUG 27074 / LMG 4051 / NBRC 15346 / NCIMB 9279 / VKM B-1422 / R1) OX=243230 GN=acn PE=1 SV=1
P09339	Aconitate hydratase A OS=Bacillus subtilis (strain 168) OX=224308 GN=citB PE=1 SV=4

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002405 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00694 all species →	Aconitase_C	Aconitase C-terminal domain	Domain	Interproscan
PF00330 all species →	Aconitase	Aconitase family (aconitate hydratase)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000573 all species →	Domain	Aconitase A/isopropylmalate dehydratase small subunit, swivel domain	Interproscan
IPR018136 all species →	Binding_site	Aconitase family, 4Fe-4S cluster binding site	Interproscan
IPR015928 all species →	Homologous_superfamily	Aconitase/3-isopropylmalate dehydratase, swivel	Interproscan
IPR006249 all species →	Family	Aconitase/Iron-responsive element-binding protein 2	Interproscan
IPR015931 all species →	Homologous_superfamily	Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3	Interproscan
IPR001030 all species →	Domain	Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain	Interproscan
IPR044137 all species →	Domain	Aconitase A, swivel domain	Interproscan
IPR036008 all species →	Homologous_superfamily	Aconitase, iron-sulfur domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11670 all species →	ACONITASE/IRON-RESPONSIVE ELEMENT FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003994 all species →	Molecular Function	aconitate hydratase activity	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0006099 all species →	Biological Process	tricarboxylic acid cycle	Interproscan
GO:0006101 all species →	Biological Process	citrate metabolic process	Interproscan
GO:0030350 all species →	Molecular Function	iron-responsive element binding	Interproscan
GO:0051539 all species →	Molecular Function	4 iron, 4 sulfur cluster binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERKREP00000023367.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of BRAKERKREP00000023367.1 across 29 RNA-seq samples of Hydra viridissima. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

29Samples

0TPM > 0

7Conditions

0.0Max TPM

0.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
whole body	18	0	0.00	0.00
Whole	6	0	0.00	0.00
aposymbioic hydra M9 strain · aposymbioic hydra rep1	1	0	0.00	0.00
aposymbioic hydra M9 strain · aposymbioic hydra rep2	1	0	0.00	0.00
symbioic hydra M9 strain · symbioic hydra rep1	1	0	0.00	0.00
symbioic hydra M9 strain · symbioic hydra rep2	1	0	0.00	0.00
unannotated	1	0	0.00	0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study
SRR21134050	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134051	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134052	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134053	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134054	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134055	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134056	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134057	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134058	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134059	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134060	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134061	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134062	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134063	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134064	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134065	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134066	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134067	whole body	whole body	not recorded	not recorded	SRP392977
SRR10058802	Whole	Whole	not recorded	not recorded	SRP220397
SRR10058803	Whole	Whole	not recorded	not recorded	SRP220397
SRR10058804	Whole	Whole	not recorded	not recorded	SRP220397
SRR10058805	Whole	Whole	not recorded	not recorded	SRP220397
SRR10058806	Whole	Whole	not recorded	not recorded	SRP220397
SRR10058807	Whole	Whole	not recorded	not recorded	SRP220397
DRR048593	aposymbioic hydra M9 strain · aposymbioic hydra rep1	not recorded	not recorded	aposymbioic hydra rep1	DRP003902
DRR048594	aposymbioic hydra M9 strain · aposymbioic hydra rep2	not recorded	not recorded	aposymbioic hydra rep2	DRP003902
DRR048595	symbioic hydra M9 strain · symbioic hydra rep1	not recorded	not recorded	symbioic hydra rep1	DRP003902
DRR048596	symbioic hydra M9 strain · symbioic hydra rep2	not recorded	not recorded	symbioic hydra rep2	DRP003902
ERR13389755	unannotated	not recorded	not recorded	not recorded	ERP162636

Source: CnidoSite RNA-seq expression matrices (HVIRI_TPM, StringTie quantification over 29 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.