Gene detail

Detailed information of BRAKERKREP00000023402.1 in Hydra viridissima

Genomic Location: not available for this species
NR annotation: WP_086064060.1, Rne/Rng family ribonuclease [Bordetella genomosp. 8]
Species Hydra viridissima · all data for this species · gene families

Sequence

CDS

BRAKERKRET00000023402

ATGAAGCGCATGCTATTTAACGCAACGCACCAGGAAGAACTGCGCGTTGCCATCGTCGATGGGCAAAAACTCATCGACCTCGATATTGAAACTGCCGGGCGTGAACAGCGCAAAGGCAATATTTATAAAGGCGTTATTACCCGCATTGAACCTGGTCTTGAAGCCTGCTTTGTTAACTACGGCGAAGAACGCCACGGCTTTCTACCCTTTAAAGAAGTCGCACGCAGCTATTTTAAGGAAGGGGTAGATGTCCGCACTGCGCGTATTCAGGAAACCCTGCGCGAAGGCCAAGAACTGATAGTCCAGATTGAGAAAGAAGAACGCGGCAACAAGGGTGCTGCCCTCACCACCTTTATCTCACTGGCCGGCCGCTACTTGGTTCTAATGCCTAACAATCCACGTGGCGGAGGCGTATCGCGCCGGGTCGAAGGCGAAGATCGGCAGGAGTTACGCGACACCATGGAGCAGCTGGAGCTGCCCTCAGGCATGAGTATTATTGCCCGGACCGCTGGCATTGGCCGCAGCGTCGAAGAGCTGCAATGGGACTTATCCTATCTGTTGCAGCTGTGGACAGCAGTCGATGGCGCAGCCCGCGAGAATCCCGCGCCTACGCTTATTTATCTAGAATCCAGCCTCGTCATACGGGCCATACGCGATTATTTTTCTCCCGAAATTGGCGAAATCCTTATAGACACTGACGACATCGCCGATCAAGCCACCGCTTTCATGAGCGTGGTAATGCCCGACAACGTGCAACGGGTCAAGCGCTACCGCGACGACATACCGCTTTTCTCGCGCTTTCAGATCGAACACCAAATCGAAACCGCCTATTCCCGCACTGTGCAATTGCCGTCTGGCGGGGCCGTGGTGATCGACCATACTGAGGCGTTGGTAGCCATAGACGTCAATTCGGCCCGCTCGACCCGCGGTGCTGACATCGAGGAAACCGCGCTACGTACTAATCAGGAAGCCGCTGATGAAGTCGCCCGCCAGCTGCGTTTGCGCGACTTAGGCGGTTTAATCGTCATCGACTTCATCGATATGGAGGACAACAAGAACCAGCGCGCCGTTGAACAGCGCCTGCGTGATGCCCTGCGTTTCGATCGCGCCCGCGTCCAAATGGGCAAAATTTCTCGCTTTGGTCTGATGGAGCTCTCGCGCCAACGCTTACGTCCGGCCTTAAACGAAGGGTCCCACATAACCTGCCCGCGTTGTAATGGCACCGGCGTTATTCGCGACGCCGAGTCCAGCGCCCTGCATGTGTTGCGCCTGCTGCAGGAAGAGGCGATGAAGGAAAATACGGCGGCGATCCATGCTCAGGTACCGGTAGAGGTGGCCACCTTCTTGCTCAATGAAAAGCGCGCCGACATTGCAAAGATAGAAGCTCGCCTGAAGGTCAACCTAGTTCTCATTCCGAATAAGCATCTGGAAACCCCGCATCACCACATCGAACGCTTGCGTCACGACGATCCTCGTCTAGAAGAATTAAAAGCCAGTTTCGAACTCGCCGAAACGCCTGCGACCAACATGGTCTGGGCCCCCCGCGAGCATGAGGTTAAAAGCCGCCCGGAAGCTTTGGTTAAAGGCATCACGCCCCTGCAACCGGCACCCACTCCGGCGAGCGCGCTGGCGGCGCCCACGGCGGGAACAGGCTGGAGTCTATTCAAGCGCCTACTAAGCTGGCTGACAAGTAGCGCCAGCGCGCAGCCAACAGTGACTGAGCCAGAAACAAAAACCCGGCGTCCTTCCACGCGCGGCAAAGCGCGTGGCGGTGACCCCCGCCCCGAACGCCGCGGTTCGGACCGCAGCCGCGAGCGCGACAGTCGTAGTGACCGTCCAGAAGCGAGTCAAGCCGATGATGCACCTCGTCAGCATAGCCGCAGTCGCCGTCCGCAATTGGAACGCACCGAACCAGCGCGCGAACCGCATGCCGAAGGAGACTTGGCGCAAATTGCTGCACCCAGCGAACCAGCTTCGGTAGCAGATGCTAATAACGATGCTGGCCCAAGCCGTAATAGCCGTGGCCGCCGCTCCCGCGGGCGCACTCGGCGTGAAGAAGGGCAGACCGCCGTCTCCCCAACGGCCACAGAAGAAAACAAGCCTATTCCCTTGCCAGTAACGCAATTGACCTTAGTCCCTGTCGTCACCGATGAAGACGAAGCGATGCAGGACGGTCGCAACGAAGCCGAAGCAGGGATGGACCTGGCCCAAGGGAGCGAAGGCTTGGCCGATCCTGAACGTAAGCGCCGACGCCGGCGCAGCCGCCGCAATCGCCGTAGTCAAGAAGACGCCGTGCTGACAACCGATAGCGGCGAAGACGGCGAGGGGGATAGCCCGCTGGCAGCGACGGCAGAATCCGCCTTAAAAGAAATAGCTGAGCCAGCCACGGCGGTGTCCCTTAACGCACCGCTACCGCAAACGCCTGTCGCTACGATTGAGACAACGATGGCGCCTGTGGCTAGCCCTGTTGTGATGCCGTCCACGCCGGCCGACACCCTCTCTGCAACGTCCGCTTCGCCGGTTCATGCAAAGCCTGCAAAACCCGTTGCGACAGGGACAACAGAGGAGCGCATCATTGTTCCCACCACCCCGACGCAACGCCCAGACCTGTACGAGGTGGTGACCTCCGCCGGGCTGAAATGGGTGGAAACCGATCCCGAACGTCATGCGCAAGCTCAAATGCGCCTTGCGGCCCACGCTGGGCCCGTACGCATCGGCCGCGAACGTAAGCCAGCGCCGCTGGTATCCAACGCGCCGCTAACGCAGATCGAAACACAGCGCCATTAA

Transcript

BRAKERKRET00000023402

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P44443	Ribonuclease E OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) OX=71421 GN=rne PE=3 SV=1
P21513	Ribonuclease E OS=Escherichia coli (strain K12) OX=83333 GN=rne PE=1 SV=6
Q8K9J9	Ribonuclease E OS=Buchnera aphidicola subsp. Schizaphis graminum (strain Sg) OX=198804 GN=rne PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0017423 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00575 all species →	S1	S1 RNA binding domain	Domain	Interproscan
PF10150 all species →	RNase_E_G	Ribonuclease E/G family	Family	Interproscan
PF20833 all species →	RNase_E_G_Thio	RNase E/G, Thioredoxin-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003029 all species →	Domain	S1 domain	Interproscan
IPR028878 all species →	Family	Ribonuclease E	Interproscan
IPR019307 all species →	Family	RNA-binding protein AU-1/Ribonuclease E/G	Interproscan
IPR004659 all species →	Family	Ribonuclease E/G	Interproscan
IPR012340 all species →	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan
IPR048583 all species →	Domain	RNase E/G, thioredoxin-like domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR30001 all species →	RIBONUCLEASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0006396 all species →	Biological Process	RNA processing	Interproscan
GO:0008995 all species →	Molecular Function	ribonuclease E activity	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0004540 all species →	Molecular Function	RNA nuclease activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006364 all species →	Biological Process	rRNA processing	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K08300	rne; ribonuclease E	EC:3.1.26.12	Ribosome biogenesis	ko03009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.