Detailed information of BRAKERKREP00000023443.1 in Hydra viridissima

Genomic Location: :...
NR annotation: WP_012248766.1, RNA-binding transcriptional accessory protein Tex [Bordetella petrii]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q45388Protein tex OS=Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251) OX=257313 GN=tex PE=4 SV=2
Q51152Uncharacterized protein NMB0075 OS=Neisseria meningitidis serogroup B (strain ATCC BAA-335 / MC58) OX=122586 GN=NMB0075 PE=4 SV=2
P46837Protein YhgF OS=Escherichia coli (strain K12) OX=83333 GN=yhgF PE=1 SV=3

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF16921Tex_YqgFTex protein YqgF-like domainDomainInterproscan
PF00575S1S1 RNA binding domainDomainInterproscan
PF12836HHH_3Helix-hairpin-helix motifDomainInterproscan
PF17674HHH_9HHH domainDomainInterproscan
PF09371Tex_NTex-like protein N-terminal domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR050437FamilyBacterial ribosomal protein bS1Interproscan
IPR032639DomainTex protein, YqgF-like domainInterproscan
IPR010994Homologous_superfamilyRuvA domain 2-likeInterproscan
IPR023323Homologous_superfamilyTex-like domain superfamilyInterproscan
IPR003029DomainS1 domainInterproscan
IPR023319Homologous_superfamilyTex-like protein, HTH domain superfamilyInterproscan
IPR037027Homologous_superfamilyYqgF/RNase H-like domain superfamilyInterproscan
IPR012337Homologous_superfamilyRibonuclease H-like superfamilyInterproscan
IPR044146DomainTex, S1 domainInterproscan
IPR041692DomainHHH domain 9Interproscan
IPR012340Homologous_superfamilyNucleic acid-binding, OB-foldInterproscan
IPR006641DomainYqgF/RNase H-like domainInterproscan
IPR018974DomainTex-like protein, N-terminalInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR1072430S RIBOSOMAL PROTEIN S1Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003729Molecular FunctionmRNA bindingInterproscan
GO:0003735Molecular Functionstructural constituent of ribosomeInterproscan
GO:0005829Cellular ComponentcytosolInterproscan
GO:0006412Biological ProcesstranslationInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0006139Biological Processnucleobase-containing compound metabolic processInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K06959tex; protein Tex-Transcription-deepkoala

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