Genomic Location: not available for this species
NR annotation: GLC62171.1, hypothetical protein PLESTB_001848100 [Pleodorina starrii]
Species Hydra viridissima · all data for this species · gene families
| CDS |
| BRAKERKRET00000023448 |
| Transcript |
| BRAKERKRET00000023448 |
| Protein |
| BRAKERKREP00000023448.1 |
| UniProt accession | Description |
|---|---|
| A3PRY1 | sn-glycerol-3-phosphate import ATP-binding protein UgpC OS=Cereibacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) OX=349101 GN=ugpC PE=3 SV=1 |
| Q3IX40 | sn-glycerol-3-phosphate import ATP-binding protein UgpC OS=Cereibacter sphaeroides (strain ATCC 17023 / DSM 158 / JCM 6121 / CCUG 31486 / LMG 2827 / NBRC 12203 / NCIMB 8253 / ATH 2.4.1.) OX=272943 GN=ugpC PE=3 SV=1 |
| Q6CZ34 | sn-glycerol-3-phosphate import ATP-binding protein UgpC OS=Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672) OX=218491 GN=ugpC PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0036354 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00528 all species → | BPD_transp_1 | Binding-protein-dependent transport system inner membrane component | Family | Interproscan |
| PF09928 all species → | DUF2160 | Predicted small integral membrane protein (DUF2160) | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR000515 all species → | Domain | ABC transporter type 1, transmembrane domain MetI-like | Interproscan |
| IPR027417 all species → | Homologous_superfamily | P-loop containing nucleoside triphosphate hydrolase | Interproscan |
| IPR008995 all species → | Homologous_superfamily | Molybdate/tungstate binding, C-terminal | Interproscan |
| IPR035906 all species → | Homologous_superfamily | MetI-like superfamily | Interproscan |
| IPR018678 all species → | Family | Protein of unknown function DUF2160, transmembrane | Interproscan |
| IPR052730 all species → | Family | Sugar-specific ABC transporter permease | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR43759 all species → | TREHALOSE TRANSPORT SYSTEM PERMEASE PROTEIN SUGA | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0016020 all species → | Cellular Component | membrane | Interproscan |
| GO:0055085 all species → | Biological Process | transmembrane transport | Interproscan |
BRAKERKREP00000023448.1.Transcript abundance of BRAKERKREP00000023448.1 across 29 RNA-seq samples of Hydra viridissima. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole body | 18 | 0 | 0.00 | 0.00 | |
| Whole | 6 | 0 | 0.00 | 0.00 | |
| aposymbioic hydra M9 strain · aposymbioic hydra rep1 | 1 | 0 | 0.00 | 0.00 | |
| aposymbioic hydra M9 strain · aposymbioic hydra rep2 | 1 | 0 | 0.00 | 0.00 | |
| symbioic hydra M9 strain · symbioic hydra rep1 | 1 | 0 | 0.00 | 0.00 | |
| symbioic hydra M9 strain · symbioic hydra rep2 | 1 | 0 | 0.00 | 0.00 | |
| unannotated | 1 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (HVIRI_TPM,
StringTie quantification over 29 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
