Gene detail

Detailed information of BRAKERKREP00000023524.1 in Hydra viridissima

Genomic Location: :...
NR annotation: WP_103273228.1, 2-oxoglutarate dehydrogenase E1 component [Achromobacter sp. AONIH1]

Gene Structure

More details in Jbrowse

Sequence

CDS

BRAKERKRET00000023524

ATGTCTACGGGAACAGAGTCCCTATCTACGTCTTATCTGTTTGGTGGCAATGCCCCTTACGTCGAAGAGCTTTACGAGGCCTACCTCGATAATCCGGCCGCGGTGCCTGATAATTGGCGATTGTATTTCGAGCAGCTACAGCATGTTGCTGCGCCAGACGGGCAAGAATCTACGCGCGATCAGGCCCACACGCCTGTCATCGCCTCGTTTGCGCAGCGCGCCAAGGCAAATGCCTTTGTGCAGCATGCGCAGCAGCCTGACCTCTCGGTTGCAAACAAGCAGGTATCAGTACAGTCGCTCATTGCGGCCTATCGTTCGCTTGGCTCGCACTTCGCTGACTTAGATCCTCTAAAACGCCAGGAACGACCTCATATCCCGGAGCTGGATCCTGCTTTCTACGATCTGACTGAAGCGGATCTAGATCAAACTTATTCGGCCACCAATACCTATTTCACGACCGCTAGCAGTATGACGCTGCGGGATATCTTGAAGGCATTGCGTGATACCTACTGCCGCACCATCGGCGCCGAATTTACGCATATCTCTGACCCGGCCGCCAAGCGCTGGATTCAAGAGCGTTTGGAGAGTACGCGCAGTACCCCCACTTATACTGTTGAAGAAAAGCGCCATATTCTGCAGCAGCTTACCGAATCCGAAGGTTTAGAGCGGTTTTTGCACACCAAATATGTAGGCCAGAAGCGTTTTTCACTCGAAGGTGGTGAGAGCTTCATCGCCGCGATGGACGAGGTGGTAAATCATGCCGGTGAAAGGGGTGTGCAAGAAATCGTGGTGGGTATGGCGCACCGCGGTCGCTTGAATCTGCTGGTTAATATCATGGGCAAGATGCCCGGTGATTTATTTGCTGAGTTTGAAGGCAAGCATGCCGAAGGCCTTGCGGCCGGCGACGTAAAGTATCACAACGGTTTTTCCAGTGACCTCTCCACGCGCGGCGGACCCGTTCATTTGTCACTCGCGTTCAATCCGTCCCATCTGGAAATCGTTAATCCGGTAGTCGAAGGTAGTGCTCGCGCTCGTCAAGAACGTCGCGGCGATCACGAAGGCAAGCAGGCGCTACCAGTCCTGGTGCACGGTGATGCTGCTTTTGCCGGCCAAGGCGTGGTGATGGAAACGCTAAACCTGGCGCAGACTCGGGGCTATGGCACCGGAGGCACGCTGCATATCGTTATCAATAATCAAATAGGCTTCACTACGTCCGATACGCGTGATGCGCGTTCCACGCTCTATTGCACCGACGTGGTCAAAATGATCGAGGTGCCGGTTTTTCACGTCAATGGCGACGATCCTGAAGCAGTCGTTTTTGTGACCAAGCTGGCGTTGGACTATCGTCTACAGTTTGGTCATGACGCTGTGGTGGACATTGTGTGTTTCCGCAAGTTGGGTCACAACGAACAGGATACGCCTTCGCTGACGCAACCGCTTATGTACAAACGCATCAGCCATCATCCTGGTACGCGCAAGCTGTATGCAGACAAGCTCCTAACACAAGGCGTGCTGGCCGAGGGCGAAGCTGAACAAATGGTGAAGGATTTTCGCCATGTCATGGAAGATGGCCAGCGCACCATTGAGCCGGTTCTAACCGATTACAAGAGTAAGTACGCTATCGACTGGTCGCCATTCTTAGGCGCCAAATGGACTGACCAGGGCGATACTGCCGTGCCGTTGGCAGAACTAAAGCGCATAGGCGAACGTATCACTACCTTACCCGAAGATTTTACCGTGCATCCATTGGTCGCCAAAATGTTGAAGGACCGCCACGCCATGGCCAAGGGTGAAATCAACCTCGATTGGGGCATGGGCGAGCATTTGGCTTTTGCGACGCTGGTCGCCTCCGGGTACGCTGTGCGCTTCACGGGGCAGGATTCTGGCCGTGGTACTTTCACTCACCGCCACGCCGTCCTGCATGATCAAAACCGCGAGCGCTGGAACGACGGTACTTATGTGCCGCTGCAAAACGTTTCGGAAGGGCAGGCGCCTTTTATGATTATAGATTCGGTGCTGTCCGAAGAAGCGGTATTGGCTTTTGAATACGGTTATTCAACTGCTGAGCCCAATACGCTTACCATTTGGGAAGCTCAGTTTGGCGATTTTGCCAACGGGGCACAAGTGGTGATCGACCAATTCATCAGTTCCGGTGAAGCAAAGTGGGGCCGTCAGTCGGGCCTAACGATGATGTTGCCGCATGGTTATGAAGGCCAAGGTCCAGAGCACTCGTCAGCGCGCATCGAGCGCTTTCTGCAGTTGTGCGCCGATAACAACATGCAAGTGGTCCAACCAACGACCGCCTCGCAGATTTTTCATTTGCTGCGTCGCCAAATGATTCGTCTGCTGCGCAAGCCACTGGTTATTTTCACGCCCAAGTCGCTCTTGCGTCACAAAGATGCGGGTTCGCCGTTGACCGAATTGGCCGGCGGCAGCTTCCGCACGGTGATCGGTGAAGTGGACGACACGATACAAGCCGCTGCCGTCAAACGTGTGCTGGTTTGCTCGGGTAAGGTTTACTACGACTTAGTTCACGCGCGTGCCGAACGTGGCGCCGACCACGTTGCCATTATTCGTGTCGAACAGCTATATCCGTTTGCGCATAAGGCGTTTGAAAGCGAGTTGCGCAAGTACCCGAAGGCGACCGAAGTAATCTGGGTGCAAGACGAACCACAGAATCAAGGATCTTGGTTTTCTATTCAGCACCACCTATACCAAAACATGACTGAAGGTCAAAAGCTGGGGTATGCCGGCCGTCCGGCTTCGGCTTCACCCGCTGTGGGCTATTTGGCCAAACATTTGGAACAGCAAAAAGTGCTGATAGACCAGGCTTACGCTGCCAAGTACAAGGGTTTCCTGCTGACGAAATAA

Transcript

BRAKERKRET00000023524

Protein

Uniprot

Uniprot term	Description
Q59106	2-oxoglutarate dehydrogenase E1 component OS=Cupriavidus necator (strain ATCC 17699 / DSM 428 / KCTC 22496 / NCIMB 10442 / H16 / Stanier 337) OX=381666 GN=odhA PE=3 SV=2
P20707	2-oxoglutarate dehydrogenase E1 component OS=Azotobacter vinelandii OX=354 GN=sucA PE=3 SV=1
P0AFG5	2-oxoglutarate dehydrogenase E1 component OS=Escherichia coli O157:H7 OX=83334 GN=sucA PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16078	2-oxogl_dehyd_N	2-oxoglutarate dehydrogenase N-terminus	Family	Interproscan
PF02779	Transket_pyr	Transketolase, pyrimidine binding domain	Domain	Interproscan
PF16870	OxoGdeHyase_C	2-oxoglutarate dehydrogenase C-terminal	Family	Interproscan
PF00676	E1_dh	Dehydrogenase E1 component	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR032106	Domain	2-oxoglutarate dehydrogenase E1 component, N-terminal domain	Interproscan
IPR005475	Domain	Transketolase-like, pyrimidine-binding domain	Interproscan
IPR011603	Family	2-oxoglutarate dehydrogenase E1 component	Interproscan
IPR031717	Domain	Multifunctional 2-oxoglutarate metabolism enzyme, C-terminal	Interproscan
IPR001017	Domain	Dehydrogenase, E1 component	Interproscan
IPR029061	Homologous_superfamily	Thiamin diphosphate-binding fold	Interproscan
IPR042179	Homologous_superfamily	Multifunctional 2-oxoglutarate metabolism enzyme, C-terminal domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23152	2-OXOGLUTARATE DEHYDROGENASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0016624	Molecular Function	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor	Interproscan
GO:0030976	Molecular Function	thiamine pyrophosphate binding	Interproscan
GO:0004591	Molecular Function	oxoglutarate dehydrogenase (succinyl-transferring) activity	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0006099	Biological Process	tricarboxylic acid cycle	Interproscan
GO:0045252	Cellular Component	oxoglutarate dehydrogenase complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K00164	OGDH, sucA; 2-oxoglutarate dehydrogenase E1 component	EC:1.2.4.2	Lipoic acid metabolism	ko00785	deepkoala