Gene detail

Detailed information of BRAKERKREP00000023574.1 in Hydra viridissima

Genomic Location: not available for this species
NR annotation: KAH0438783.1, hypothetical protein KCU90_g3449, partial [Aureobasidium melanogenum]
Species Hydra viridissima · all data for this species · gene families

Sequence

CDS

BRAKERKRET00000023574

ATGTACGCCGTCAGTCTGGAAAACGTCTCGAAAATCTATCCTTCCCGTCAAAACGGTTGGCAAAAATGGTTCGGCTTGGCTTCCGGCACGGGCTTTCAGGCATTAAATAATGTCAGTCTTAACATTGAGCCCGGCGAATTCTTTGGCCTACTCGGCCCCAACGGCGCTGGCAAGACGACgcttatttctattttagcGGGACTGGCGCGCGCGAGCGCCGGGCGGGCTAGCGTGTGCGGCTACGATGTGGTGGCCGATTACAAGACTGCACGCCGAGCGCTAGGGATGGTGCCACAGGAGCTGGTCTACGACCCTTTCTTTACGGTGCGCGAAACGCTGCGTATTCAGTCGGGCTATTTTGGCTTACGCAAGAACGACGACTGGATAGACGAAATTCTTTCCAACCTAGGCCTGGCGGACAAGGCCCATGTCAACATGCGGGCCCTCTCCGGCGGTATGAAGCGCCGCGTGTTGGTGGCCCAAGCCTTGGTGCATCGCCCGCCGGTCATTGTTCTAGATGAGCCTACGGCAGGGGTGGACGTCGACCTGCGCCGTACGTTGTGGGAATTCATCTCGCGTCTGAACAAGGCCGGACACACCATTATGCTCACTACCCATTACTTGGAAGAAGCCGAGGCGCTTTGCGGGCGCATCGCCATACTTAAAGGGGGCCACTTGGTGGCGCTGGAAGCCACGCAGGCGCTGCTGGCGCGTCTAGGCAGCGCCGACCTCGAAGACGCCTTTACTCGCATTATGCGTAAGCCTGCAAACCATCGCCGCGCCCGTTATCACCGCTTTACTGTATCTACTGGTTTTTGCCCACGTGCTCGAAGGGCATCTGGTCTACAGCAACGTGCCTTACACGTCGTTCCTCATCCCCGGCCTGATGATGATGAGCATGCTGCAAAACGCTTTCGCCAATCCGTCTTCCTCGCTTATCCAAAGCCGCATCACCGGCAACCTGGTGTTTATGCTCTTGCCACCGCTGTCGCACCGCGAGATTTTTGCCGCTTATGTCTTGGCTGCCGTGGTGCGTGGAATGGTAGTGGGCGCCTGCGTATGGATTACGGCCTTAGGTTGGGTTTGGTTGCCGGCGGCGCATCCAGTATGGATTCTTGTTTTCACCGTGCTGGCCTGTGCCATCATGGGCGCACTAGGTCTCATTGCTGGTTTGTGGTCGGAGAAATTCGATCAATTAGCGGCTTTTCAGAATTTTGTGATTATGCCGGTCACTTTTCTATCTGGGGTGTTTTATTCGATACACACGCTGCCGCCTTTCTGGTTGTACGTCTCGCACTGGAACCCCATTTTTTACGCCATAGACGGATTCCGCTACGGCTTCTTTTCCGTCTCCGACGTTTCCCCATGGCACAGCTTGGCCGTAGTGACGGGCGTACTTATTGTGCTGACGCTGTTTGCGTTGCGCTTGCTGGCCAGTGGCTACAAACTCAGAAACTAACCCGCTATGCTTCCCACCCCCGAGCAGGTCCGTCAATACATTGCCGACGGGTTGCCCTGCAAACGCCTGATCGCCCGGCATCAGCTGGTGTACGCCGCGCTGGGCGACCGTATGAAAGCAGAAATTCATGCCCTTTCCATGCGTACGCTGACTCCTCACGAATACGCCCTGGCCCGCCACTGATGGACAAATTACGTATTGCAGGGGGCGCCAAACTGCACGGTGAAGTTATCGTCTCGGGTGCTAAGAACGCCGCGCTGCCCATTCTGTGCGCCTCGCTTCTGACGGCAGAACCCATCGTGTTGTCCAACGTCCCAGCGTTGAATGATATTTCCACCACACTACGCTTGCTCGACCGCATCGGCGTTAAGACCACGCGTCAGCCTGACGGCATCCTATGCCTGCAGGCCCATCAGGTCGATAAATGCGAAGCGCCGTACGAACTTGTTAAAACGATGCGTGCGTCTGTGTTGGTGCTAGGACCGCTTGTCGCTCGCTTCGGTTATGCGCGTGTCAGTTTGCCTGGCGGTTGCGCCATCGGGCAGCGGCCAGTAGATCAGCACATCAAGGGCCTAGCCGCGCTAGGTGCCGATATCAGCATCGAGCACGGCTTCGTGGTAGCGCGCGCTCAGCGGTTAAAAGGGGCGTCTATTCTGACTGACATGGTGACGGTCACCGGCACTGAAAATCTGCTCATGGCCGCTGTCTTGGCAGAAGGGCAAACCGTACTGGAAAACGCCGCGCGCGAACCCGAGGTGGTGGATTTGGCCGAATTGCTCATTAAGATGGGCGCGCGTATTCAAGGCCACGGCACCGACCGCATTGTTATCGAAGGCGTGGAGCGCTTGCACGGCGCTGAGCACCGGGTGATTCCTGACCGCATTGAGGCGGGTACTTTTTTATGCGCCGTGGGGGCAGTCGGTGGCGACATCACGCTGCGCAACGCCGCTCCTCACACCATGGGAGCCACGCTAGATAAGCTCATCGAAGCCGGCCTTAGGATCGAAACCGGTCCTGACTGGATTCGCGCGATTATGTGCGGCAGACCGCAAGCCGTTGATTTTCGCACGCATGAATATCCCGGCTTTGCCACTGACATGCAGGCGCAACTAATGGCGCTCAACGTTATCGCCGACGGCACGGCGGTCATCGTCGAAAATATTTTCGAAAACCGCTACATGCACGTACAGGAACTGCGGCGCTTGGGCGCCGACATCGATATCGACGGCCATACTGCTATTGTGCGCGGCGTGCCTCAGCTCTCCGGCGCCGCTGTCATGGCCACCGATTTGCGCGCGTCTGCCAGCCTGGTTATCGCTGGCATGGCCGCTGAGGGTGACACGCTGATTGATCGCATCTATCACCTCGATCGCGGCTACGAGCACATGGAAGTGAAGTTGCGTCGGCTCGGCGCCAACATAGACCGTATTAGCAGCAGCGCCGCAGCATGA

Transcript

BRAKERKRET00000023574

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q7WDY6	UDP-N-acetylglucosamine 1-carboxyvinyltransferase OS=Bordetella bronchiseptica (strain ATCC BAA-588 / NCTC 13252 / RB50) OX=257310 GN=murA PE=3 SV=1
Q7VSZ3	UDP-N-acetylglucosamine 1-carboxyvinyltransferase OS=Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251) OX=257313 GN=murA PE=3 SV=1
A9HWD9	UDP-N-acetylglucosamine 1-carboxyvinyltransferase OS=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) OX=340100 GN=murA PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0010619 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00275 all species →	EPSP_synthase	EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)	Family	Interproscan
PF00005 all species →	ABC_tran	ABC transporter	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036968 all species →	Homologous_superfamily	Enolpyruvate transferase domain superfamily	Interproscan
IPR001986 all species →	Domain	Enolpyruvate transferase domain	Interproscan
IPR005750 all species →	Family	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR050068 all species →	Family	UDP-N-acetylglucosamine 1-carboxyvinyltransferase MurA subfamily	Interproscan
IPR017871 all species →	Conserved_site	ABC transporter-like, conserved site	Interproscan
IPR003593 all species →	Domain	AAA+ ATPase domain	Interproscan
IPR013792 all species →	Homologous_superfamily	RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta	Interproscan
IPR003439 all species →	Domain	ABC transporter-like, ATP-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43783 all species →	UDP-N-ACETYLGLUCOSAMINE 1-CARBOXYVINYLTRANSFERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016765 all species →	Molecular Function	transferase activity, transferring alkyl or aryl (other than methyl) groups	Interproscan
GO:0008760 all species →	Molecular Function	UDP-N-acetylglucosamine 1-carboxyvinyltransferase activity	Interproscan
GO:0019277 all species →	Biological Process	UDP-N-acetylgalactosamine biosynthetic process	Interproscan
GO:0009252 all species →	Biological Process	peptidoglycan biosynthetic process	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERKREP00000023574.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of BRAKERKREP00000023574.1 across 29 RNA-seq samples of Hydra viridissima. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

29Samples

0TPM > 0

7Conditions

0.0Max TPM

0.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
whole body	18	0	0.00	0.00
Whole	6	0	0.00	0.00
aposymbioic hydra M9 strain · aposymbioic hydra rep1	1	0	0.00	0.00
aposymbioic hydra M9 strain · aposymbioic hydra rep2	1	0	0.00	0.00
symbioic hydra M9 strain · symbioic hydra rep1	1	0	0.00	0.00
symbioic hydra M9 strain · symbioic hydra rep2	1	0	0.00	0.00
unannotated	1	0	0.00	0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study
SRR21134050	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134051	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134052	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134053	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134054	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134055	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134056	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134057	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134058	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134059	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134060	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134061	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134062	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134063	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134064	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134065	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134066	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134067	whole body	whole body	not recorded	not recorded	SRP392977
SRR10058802	Whole	Whole	not recorded	not recorded	SRP220397
SRR10058803	Whole	Whole	not recorded	not recorded	SRP220397
SRR10058804	Whole	Whole	not recorded	not recorded	SRP220397
SRR10058805	Whole	Whole	not recorded	not recorded	SRP220397
SRR10058806	Whole	Whole	not recorded	not recorded	SRP220397
SRR10058807	Whole	Whole	not recorded	not recorded	SRP220397
DRR048593	aposymbioic hydra M9 strain · aposymbioic hydra rep1	not recorded	not recorded	aposymbioic hydra rep1	DRP003902
DRR048594	aposymbioic hydra M9 strain · aposymbioic hydra rep2	not recorded	not recorded	aposymbioic hydra rep2	DRP003902
DRR048595	symbioic hydra M9 strain · symbioic hydra rep1	not recorded	not recorded	symbioic hydra rep1	DRP003902
DRR048596	symbioic hydra M9 strain · symbioic hydra rep2	not recorded	not recorded	symbioic hydra rep2	DRP003902
ERR13389755	unannotated	not recorded	not recorded	not recorded	ERP162636

Source: CnidoSite RNA-seq expression matrices (HVIRI_TPM, StringTie quantification over 29 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.