Detailed information of BRAKERKREP00000023669.1 in Hydra viridissima

Genomic Location: :...
NR annotation: WP_111826993.1, tRNA pseudouridine(55) synthase TruB [Achromobacter sp. HZ01]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
P65853tRNA pseudouridine synthase B OS=Bordetella bronchiseptica (strain ATCC BAA-588 / NCTC 13252 / RB50) OX=257310 GN=truB PE=3 SV=1
P65852tRNA pseudouridine synthase B OS=Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251) OX=257313 GN=truB PE=3 SV=1
P59874tRNA pseudouridine synthase B OS=Bordetella parapertussis (strain 12822 / ATCC BAA-587 / NCTC 13253) OX=257311 GN=truB PE=3 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01509TruB_NTruB family pseudouridylate synthase (N terminal domain)FamilyInterproscan
PF16198TruB_C_2tRNA pseudouridylate synthase B C-terminal domainFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR014780FamilytRNA pseudouridine synthase II, TruBInterproscan
IPR002501DomainPseudouridine synthase II, N-terminalInterproscan
IPR032819DomaintRNA pseudouridylate synthase B, C-terminalInterproscan
IPR020103Homologous_superfamilyPseudouridine synthase, catalytic domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR13767TRNA-PSEUDOURIDINE SYNTHASEInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0001522Biological Processpseudouridine synthesisInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0009451Biological ProcessRNA modificationInterproscan
GO:0009982Molecular Functionpseudouridine synthase activityInterproscan
GO:0006396Biological ProcessRNA processingInterproscan
GO:0005739Cellular ComponentmitochondrionInterproscan
GO:0006400Biological ProcesstRNA modificationInterproscan
GO:1990481Biological ProcessmRNA pseudouridine synthesisInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K03177truB, PUS4, TRUB1; tRNA pseudouridine55 synthaseEC:5.4.99.25
Transfer RNA biogenesisko03016deepkoala

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