Gene detail

Detailed information of BRAKERKREP00000023697.1 in Hydra viridissima

Genomic Location: not available for this species
NR annotation: MBO9353668.1, di-trans,poly-cis-decaprenylcistransferase [Bordetella petrii]
Species Hydra viridissima · all data for this species · gene families

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q7WJ90	Isoprenyl transferase OS=Bordetella bronchiseptica (strain ATCC BAA-588 / NCTC 13252 / RB50) OX=257310 GN=uppS PE=3 SV=2
Q7WA56	Isoprenyl transferase OS=Bordetella parapertussis (strain 12822 / ATCC BAA-587 / NCTC 13253) OX=257311 GN=uppS PE=3 SV=2
Q7VYC6	Isoprenyl transferase OS=Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251) OX=257313 GN=uppS PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005865 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01255 all species →	Prenyltransf	Putative undecaprenyl diphosphate synthase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036424 all species →	Homologous_superfamily	Decaprenyl diphosphate synthase-like superfamily	Interproscan
IPR001441 all species →	Family	Decaprenyl diphosphate synthase-like	Interproscan
IPR018520 all species →	Conserved_site	Di-trans-poly-cis-decaprenylcistransferase-like, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10291 all species →	DEHYDRODOLICHYL DIPHOSPHATE SYNTHASE FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016765 all species →	Molecular Function	transferase activity, transferring alkyl or aryl (other than methyl) groups	Interproscan
GO:0000287 all species →	Molecular Function	magnesium ion binding	Interproscan
GO:0002094 all species →	Molecular Function	polyprenyltransferase activity	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0008834 all species →	Molecular Function	di-trans,poly-cis-undecaprenyl-diphosphate synthase activity	Interproscan
GO:0016094 all species →	Biological Process	polyprenol biosynthetic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00806	uppS; undecaprenyl diphosphate synthase	EC:2.5.1.31	Prenyltransferases	ko01006	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of BRAKERKREP00000023697.1 across 29 RNA-seq samples of Hydra viridissima. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

29Samples

7TPM > 0

7Conditions

17.3Max TPM

3.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole body	18	0	0.00	0.00
Whole	6	4	10.49	17.34
aposymbioic hydra M9 strain · aposymbioic hydra rep1	1	1	10.56	10.56
aposymbioic hydra M9 strain · aposymbioic hydra rep2	1	1	7.87	7.87
symbioic hydra M9 strain · symbioic hydra rep1	1	1	7.40	7.40
symbioic hydra M9 strain · symbioic hydra rep2	1	0	0.00	0.00
unannotated	1	0	0.00	0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR21134050	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134051	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134052	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134053	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134054	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134055	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134056	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134057	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134058	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134059	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134060	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134061	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134062	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134063	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134064	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134065	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134066	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134067	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR10058803	Whole	Whole	not recorded	not recorded	SRP220397	17.34
SRR10058807	Whole	Whole	not recorded	not recorded	SRP220397	16.76
SRR10058806	Whole	Whole	not recorded	not recorded	SRP220397	15.66
SRR10058805	Whole	Whole	not recorded	not recorded	SRP220397	13.18
SRR10058802	Whole	Whole	not recorded	not recorded	SRP220397	0.00
SRR10058804	Whole	Whole	not recorded	not recorded	SRP220397	0.00
DRR048593	aposymbioic hydra M9 strain · aposymbioic hydra rep1	not recorded	not recorded	aposymbioic hydra rep1	DRP003902	10.56
DRR048594	aposymbioic hydra M9 strain · aposymbioic hydra rep2	not recorded	not recorded	aposymbioic hydra rep2	DRP003902	7.87
DRR048595	symbioic hydra M9 strain · symbioic hydra rep1	not recorded	not recorded	symbioic hydra rep1	DRP003902	7.40
DRR048596	symbioic hydra M9 strain · symbioic hydra rep2	not recorded	not recorded	symbioic hydra rep2	DRP003902	0.00
ERR13389755	unannotated	not recorded	not recorded	not recorded	ERP162636	0.00

Source: CnidoSite RNA-seq expression matrices (HVIRI_TPM, StringTie quantification over 29 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.