Gene detail

Detailed information of BRAKERKREP00000023714.1 in Hydra viridissima

Genomic Location: not available for this species
NR annotation: WP_103274614.1, monovalent cation/H+ antiporter subunit A [Achromobacter sp. AONIH1]
Species Hydra viridissima · all data for this species · gene families

Sequence

CDS

BRAKERKRET00000023714

ATGGCAGCGCCCACGCCGGTGTCGGCTTATTTGCATTCGGCCACGTTGGTCAAGGCGGGTGTATTTTTGTTGGCGCGGCTGTGGCCGATCTTGGCCGGTACTAATACGTGGTTCTGGGTGATTGGCACTGCTGGCCTGATCACTTTGGCGCTAGGGGCGTCTGCTGcgctttttcaaaaagatatgAAAGGGGTTTTGGCGTATTCCACCATTAGCCACCTTGGTTTGATCACACTGCTGCTAGGCATGAATAGCGCGCTGGGACTGGTGGCGGCGATTTTCCATATGGTGAATCACGCTACGTTTAAGGCTTCGCTCTTCATGGCGGCCGGCATTGTCGACCATGAAACCGGCACGCGTGATATTACGCAGCTCAGCGGTCTTTATCGTGCCATGCCTATCACGGCGACGCTGGCGATGGTGGCAGCGGCCTCCATGGCCGGGGTGCCGTTGCTTAATGGGTTTATTTCCAAGGAAATGTTCTTCGCTGAGACGATTTTTATTAGTGGCGATTGGTGGACCCGAATGGGGTTGCCGCTAGCGGCGACATTGGCGGGCGCATTCAGCGTGGCGTATTCGTTGCGCTTTATTTTGCAGGTATTTTTTGGCCCCCCAGCCACGAATTTGCCCCGCGCCCCTCATGAACCGCCACGTTGGATGCTATTTCCTAGCGCATTTTTGGTGCTCACTTGCCTTATCGTCGGCATGCTGCCTGCTATCACCTTGGGACCTTTTTTAGACGTGGCGGCGCGCAGCATCTTGGGTACAAATATGCCAGTCTATAGCTTGGCGGTATGGCATGGCTGGAACCTACCTTTGCTAATGAGTTTAATCGCGTTAGCGGCAGGCGCTTTGCTCTACGCTGTTTTGCGCGCTCACCAGCGCGCTCATCCCGGCCACACGCCCTTTAACTATCGCTTTGATGGGGGACGCACGTCCGAGCGTTTGCTCGATGCGGTCAGCGCCGCCGCGGCTGGACTACTGCGTGGGGGGGCGTCCGAACGCTTGCAGATCCAAATGGTGATTGTCGTATCCGTTACGCTGGTCGTCGCTTGGCTGCCGTTGCGCGGGGGGGGCTGGGCGGCAGGCGCAAATCCGTTGACGCCGCTTGATCCTCTGTTCGCCTTGTTATGGGTGGTGGGCGGCGCATGCGCGATGGCAGCGGCTTACCAAGCTAAATACCATCGTCTGGCTTCCTTGATTCTGGTGGGCGGCGCGGGTCTATCTACGTGTCTTACCTTCGTCTGGTTTTCGGCGCCCGATTTGGCTTTGACGCAGCTGGCGGTGGAAGTGGTGACGGTGGTGCTTATCTTATTAGGTTTACGCTGGCTGCCACGCCGCATTCATTTTGACGATGAGAGCGGTAGCGCCGCGCGACGCGCACGCGGGCGGCGCAGCCGTGACATGGTATTAGCTTTGTTAGCGGGCGGCGGTGCAGCAGCGCTAGCTTACGCTGTGATGACGCGGCCAGACAGCAACGCCATTTcggctttttttataaaaaacgcTTTATCAAAGGGCGGCGGTGCCAATGTCGTCAATGTGATTCTGGTGGATTTTCGCGGCTTTGACACCTTCGGTGAGATTGCCGTGTTGGGCATTGTGTCTCTTACTGTATATGCCTTGCTGCGGCGTTTTAGGCCCGCGCCAGAAAGCGCTGATTTGCCCCGTCAACAGCGCCAAAAGGCTGCCCTGCACGATGCTACGCAGGCGGCGCCGGGGCCTGACACCCAATTGTTGCTGCCAGCGGGCACGATGAAAATACCGGCGGTGCTGGTGCGTTTGCTTTTGCCGATGGCGGTATTGGTATCGGTGTACTTTTTGCTACGCGGCCATGACCAACCGGGCGGGGGTTTTGTGGGCGGCCTGACGATGGCCACTGCCATTATCATGCAATACATGGTGGGCGGTACCGTATGGGTGGAATCGCGCAGTCATCTCAATCCCCAGTACTGGATAGGGTGGGGTTTGCTCTGCGCCGGTGCTGCTGCTATGTCTTCATGGTTTGCTATGCGACCCTTTCTGTCGGCGCACACTTGGGATGTGATGCTGCCAATGGGCAAACGGAGAATGCGTAGTGGAGCTGGTTTATGTCGCCGCCATTGGTGTGCTGATCGGTTCGGGCGTCTGGCTGGTGTTGCGGCCACGGACCTATCAGGTCATCATGGGATTGTCGCTATTATCTTACGCGGtgaatctttttatttttggcatGGGCCGTCTTATAGTCGGGCGCCCGCCCATCGTTGA

Transcript

BRAKERKRET00000023714

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q52978	Probable K(+)/H(+) antiporter subunit A/B OS=Rhizobium meliloti (strain 1021) OX=266834 GN=phaAB PE=3 SV=2
Q9RGZ5	Na(+)/H(+) antiporter subunit A OS=Alkalihalophilus pseudofirmus (strain ATCC BAA-2126 / JCM 17055 / OF4) OX=398511 GN=mrpA PE=1 SV=2
Q9K2S2	Na(+)/H(+) antiporter subunit A OS=Bacillus subtilis (strain 168) OX=224308 GN=mrpA PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0032686 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13244 all species →	MbhD	MBH, subunit D	Domain	Interproscan
PF20501 all species →	MbhE	MBH, subunit E	Domain	Interproscan
PF00361 all species →	Proton_antipo_M	Proton-conducting membrane transporter	Family	Interproscan
PF04039 all species →	MnhB	Domain related to MnhB subunit of Na+/H+ antiporter	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR025383 all species →	Domain	MrpA C-terminal/MbhD	Interproscan
IPR046806 all species →	Domain	MrpA C-terminal/MbhE	Interproscan
IPR001750 all species →	Domain	NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit	Interproscan
IPR050616 all species →	Family	CPA3 Na+/H+ Antiporter Subunit A	Interproscan
IPR007182 all species →	Domain	Na+/H+ antiporter MnhB subunit-related protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43373 all species →	NA(+)/H(+) ANTIPORTER SUBUNIT	Interproscan

Gene Ontology

No Gene Ontology signature was detected for BRAKERKREP00000023714.1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERKREP00000023714.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of BRAKERKREP00000023714.1 across 29 RNA-seq samples of Hydra viridissima. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

29Samples

16TPM > 0

7Conditions

29.0Max TPM

5.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole body	18	6	2.83	17.37
Whole	6	6	14.55	29.02
aposymbioic hydra M9 strain · aposymbioic hydra rep1	1	1	6.54	6.54
aposymbioic hydra M9 strain · aposymbioic hydra rep2	1	1	7.16	7.16
symbioic hydra M9 strain · symbioic hydra rep1	1	1	8.80	8.80
symbioic hydra M9 strain · symbioic hydra rep2	1	1	9.51	9.51
unannotated	1	0	0.00	0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR21134064	whole body	whole body	not recorded	not recorded	SRP392977	17.37
SRR21134060	whole body	whole body	not recorded	not recorded	SRP392977	11.45
SRR21134050	whole body	whole body	not recorded	not recorded	SRP392977	8.46
SRR21134052	whole body	whole body	not recorded	not recorded	SRP392977	7.61
SRR21134059	whole body	whole body	not recorded	not recorded	SRP392977	6.02
SRR21134056	whole body	whole body	not recorded	not recorded	SRP392977	0.02
SRR21134051	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134053	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134054	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134055	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134057	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134058	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134061	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134062	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134063	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134065	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134066	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134067	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR10058802	Whole	Whole	not recorded	not recorded	SRP220397	29.02
SRR10058804	Whole	Whole	not recorded	not recorded	SRP220397	17.32
SRR10058803	Whole	Whole	not recorded	not recorded	SRP220397	11.38
SRR10058807	Whole	Whole	not recorded	not recorded	SRP220397	10.60
SRR10058806	Whole	Whole	not recorded	not recorded	SRP220397	9.77
SRR10058805	Whole	Whole	not recorded	not recorded	SRP220397	9.23
DRR048593	aposymbioic hydra M9 strain · aposymbioic hydra rep1	not recorded	not recorded	aposymbioic hydra rep1	DRP003902	6.54
DRR048594	aposymbioic hydra M9 strain · aposymbioic hydra rep2	not recorded	not recorded	aposymbioic hydra rep2	DRP003902	7.16
DRR048595	symbioic hydra M9 strain · symbioic hydra rep1	not recorded	not recorded	symbioic hydra rep1	DRP003902	8.80
DRR048596	symbioic hydra M9 strain · symbioic hydra rep2	not recorded	not recorded	symbioic hydra rep2	DRP003902	9.51
ERR13389755	unannotated	not recorded	not recorded	not recorded	ERP162636	0.00

Source: CnidoSite RNA-seq expression matrices (HVIRI_TPM, StringTie quantification over 29 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.