Gene detail

Detailed information of BRAKERKREP00000023730.1 in Hydra viridissima

Genomic Location: not available for this species
NR annotation: WP_125285121.1, flagellar motor switch protein FliM [Achromobacter denitrificans]
Species Hydra viridissima · all data for this species · gene families

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P26418	Flagellar motor switch protein FliM OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) OX=99287 GN=fliM PE=1 SV=1
P06974	Flagellar motor switch protein FliM OS=Escherichia coli (strain K12) OX=83333 GN=fliM PE=1 SV=1
Q51465	Flagellar motor switch protein FliM OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) OX=208964 GN=fliM PE=3 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0032532 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01052 all species →	FliMN_C	Type III flagellar switch regulator (C-ring) FliN C-term	Family	Interproscan
PF02154 all species →	FliM	Flagellar motor switch protein FliM	Family	Interproscan
PF03748 all species →	FliL	Flagellar basal body-associated protein FliL	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001543 all species →	Domain	Flagellar motor switch protein FliN-like, C-terminal domain	Interproscan
IPR001689 all species →	Family	Flagellar motor switch protein FliM	Interproscan
IPR036429 all species →	Homologous_superfamily	SpoA-like superfamily	Interproscan
IPR028976 all species →	Homologous_superfamily	CheC-like superfamily	Interproscan
IPR005503 all species →	Family	Flagellar basal body-associated protein FliL	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR30034 all species →	FLAGELLAR MOTOR SWITCH PROTEIN FLIM	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003774 all species →	Molecular Function	cytoskeletal motor activity	Interproscan
GO:0009425 all species →	Cellular Component	bacterial-type flagellum basal body	Interproscan
GO:0071973 all species →	Biological Process	bacterial-type flagellum-dependent cell motility	Interproscan
GO:0006935 all species →	Biological Process	chemotaxis	Interproscan
GO:0050918 all species →	Biological Process	positive chemotaxis	Interproscan
GO:0071978 all species →	Biological Process	bacterial-type flagellum-dependent swarming motility	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERKREP00000023730.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of BRAKERKREP00000023730.1 across 29 RNA-seq samples of Hydra viridissima. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

29Samples

13TPM > 0

7Conditions

192.6Max TPM

42.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole body	18	10	58.54	192.62
Whole	6	1	13.37	80.25
aposymbioic hydra M9 strain · aposymbioic hydra rep1	1	0	0.00	0.00
aposymbioic hydra M9 strain · aposymbioic hydra rep2	1	0	0.00	0.00
symbioic hydra M9 strain · symbioic hydra rep1	1	0	0.00	0.00
symbioic hydra M9 strain · symbioic hydra rep2	1	1	22.89	22.89
unannotated	1	1	75.06	75.06

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR21134057	whole body	whole body	not recorded	not recorded	SRP392977	192.62
SRR21134065	whole body	whole body	not recorded	not recorded	SRP392977	184.89
SRR21134055	whole body	whole body	not recorded	not recorded	SRP392977	166.79
SRR21134054	whole body	whole body	not recorded	not recorded	SRP392977	104.55
SRR21134066	whole body	whole body	not recorded	not recorded	SRP392977	96.68
SRR21134051	whole body	whole body	not recorded	not recorded	SRP392977	89.61
SRR21134059	whole body	whole body	not recorded	not recorded	SRP392977	86.92
SRR21134053	whole body	whole body	not recorded	not recorded	SRP392977	73.71
SRR21134050	whole body	whole body	not recorded	not recorded	SRP392977	37.61
SRR21134052	whole body	whole body	not recorded	not recorded	SRP392977	20.25
SRR21134056	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134058	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134060	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134061	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134062	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134063	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134064	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134067	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR10058802	Whole	Whole	not recorded	not recorded	SRP220397	80.25
SRR10058803	Whole	Whole	not recorded	not recorded	SRP220397	0.00
SRR10058804	Whole	Whole	not recorded	not recorded	SRP220397	0.00
SRR10058805	Whole	Whole	not recorded	not recorded	SRP220397	0.00
SRR10058806	Whole	Whole	not recorded	not recorded	SRP220397	0.00
SRR10058807	Whole	Whole	not recorded	not recorded	SRP220397	0.00
DRR048593	aposymbioic hydra M9 strain · aposymbioic hydra rep1	not recorded	not recorded	aposymbioic hydra rep1	DRP003902	0.00
DRR048594	aposymbioic hydra M9 strain · aposymbioic hydra rep2	not recorded	not recorded	aposymbioic hydra rep2	DRP003902	0.00
DRR048595	symbioic hydra M9 strain · symbioic hydra rep1	not recorded	not recorded	symbioic hydra rep1	DRP003902	0.00
DRR048596	symbioic hydra M9 strain · symbioic hydra rep2	not recorded	not recorded	symbioic hydra rep2	DRP003902	22.89
ERR13389755	unannotated	not recorded	not recorded	not recorded	ERP162636	75.06

Source: CnidoSite RNA-seq expression matrices (HVIRI_TPM, StringTie quantification over 29 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.