Genomic Location: QPEY01000524.1:296648...297838
NR annotation: WP_053245876.1, MULTISPECIES: amino acid ABC transporter permease [unclassified Achromobacter]
Species Hydra viridissima · all data for this species · gene families
| CDS |
| BRAKERKRET00000023742 |
| Transcript |
| BRAKERKRET00000023742 |
| Protein |
| BRAKERKREP00000023742.1 |
| UniProt accession | Description |
|---|---|
| P45767 | Putative amino-acid ABC transporter permease protein YhdX OS=Escherichia coli (strain K12) OX=83333 GN=yhdX PE=3 SV=3 |
| Q52813 | General L-amino acid transport system permease protein AapQ OS=Rhizobium johnstonii (strain DSM 114642 / LMG 32736 / 3841) OX=216596 GN=aapQ PE=3 SV=1 |
| Q52664 | Glutamate/glutamine/aspartate/asparagine transport system permease protein BztB OS=Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003) OX=272942 GN=bztB PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0053088 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00528 all species → | BPD_transp_1 | Binding-protein-dependent transport system inner membrane component | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR000515 all species → | Domain | ABC transporter type 1, transmembrane domain MetI-like | Interproscan |
| IPR035906 all species → | Homologous_superfamily | MetI-like superfamily | Interproscan |
| IPR043429 all species → | Family | ABC transporter membrane protein permease protein ArtM/GltK/GlnP/TcyL/YhdX-like | Interproscan |
| IPR010065 all species → | Domain | Amino acid ABC transporter, permease protein, 3-TM domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR30614 all species → | MEMBRANE COMPONENT OF AMINO ACID ABC TRANSPORTER | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0016020 all species → | Cellular Component | membrane | Interproscan |
| GO:0055085 all species → | Biological Process | transmembrane transport | Interproscan |
| GO:0005886 all species → | Cellular Component | plasma membrane | Interproscan |
| GO:0006865 all species → | Biological Process | amino acid transport | Interproscan |
| GO:0022857 all species → | Molecular Function | transmembrane transporter activity | Interproscan |
| GO:0043190 all species → | Cellular Component | ATP-binding cassette (ABC) transporter complex | Interproscan |
| GO:0071705 all species → | Biological Process | nitrogen compound transport | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K09970 | aapQ, bztB; general L-amino acid transport system permease protein | - | Transporters | ko02000 | deepkoala |
Transcript abundance of BRAKERKREP00000023742.1 across 29 RNA-seq samples of Hydra viridissima. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole body | 18 | 0 | 0.00 | 0.00 | |
| Whole | 6 | 0 | 0.00 | 0.00 | |
| aposymbioic hydra M9 strain · aposymbioic hydra rep1 | 1 | 0 | 0.00 | 0.00 | |
| aposymbioic hydra M9 strain · aposymbioic hydra rep2 | 1 | 0 | 0.00 | 0.00 | |
| symbioic hydra M9 strain · symbioic hydra rep1 | 1 | 0 | 0.00 | 0.00 | |
| symbioic hydra M9 strain · symbioic hydra rep2 | 1 | 0 | 0.00 | 0.00 | |
| unannotated | 1 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (HVIRI_TPM,
StringTie quantification over 29 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
