Gene detail

Detailed information of BRAKERKREP00000023743.1 in Hydra viridissima

Genomic Location: not available for this species
NR annotation: WP_086056633.1, NADH-quinone oxidoreductase subunit NuoI [Bordetella genomosp. 9]
Species Hydra viridissima · all data for this species · gene families

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q2KUZ8	NADH-quinone oxidoreductase subunit I OS=Bordetella avium (strain 197N) OX=360910 GN=nuoI PE=3 SV=1
Q7WCU7	NADH-quinone oxidoreductase subunit I OS=Bordetella bronchiseptica (strain ATCC BAA-588 / NCTC 13252 / RB50) OX=257310 GN=nuoI PE=3 SV=1
Q7W5B5	NADH-quinone oxidoreductase subunit I OS=Bordetella parapertussis (strain 12822 / ATCC BAA-587 / NCTC 13253) OX=257311 GN=nuoI PE=3 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006812 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12838 all species →	Fer4_7	4Fe-4S dicluster domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR017896 all species →	Domain	4Fe-4S ferredoxin-type, iron-sulphur binding domain	Interproscan
IPR010226 all species →	Family	NADH-quinone oxidoreductase, chain I	Interproscan
IPR017900 all species →	Conserved_site	4Fe-4S ferredoxin, iron-sulphur binding, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10849 all species →	NADH DEHYDROGENASE UBIQUINONE IRON-SULFUR PROTEIN 8, MITOCHONDRIAL	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0016651 all species →	Molecular Function	oxidoreductase activity, acting on NAD(P)H	Interproscan
GO:0051539 all species →	Molecular Function	4 iron, 4 sulfur cluster binding	Interproscan
GO:0003954 all species →	Molecular Function	NADH dehydrogenase activity	Interproscan
GO:0009060 all species →	Biological Process	aerobic respiration	Interproscan
GO:0045272 all species →	Cellular Component	obsolete plasma membrane respiratory chain complex I	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00338	nuoI; NADH-quinone oxidoreductase subunit I	EC:7.1.1.2	Oxidative phosphorylation	ko00190	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of BRAKERKREP00000023743.1 across 29 RNA-seq samples of Hydra viridissima. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

29Samples

13TPM > 0

7Conditions

64.5Max TPM

17.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole body	18	3	7.73	64.53
Whole	6	6	40.17	42.22
aposymbioic hydra M9 strain · aposymbioic hydra rep1	1	1	32.40	32.40
aposymbioic hydra M9 strain · aposymbioic hydra rep2	1	1	32.70	32.70
symbioic hydra M9 strain · symbioic hydra rep1	1	1	31.35	31.35
symbioic hydra M9 strain · symbioic hydra rep2	1	1	42.32	42.32
unannotated	1	0	0.00	0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR21134056	whole body	whole body	not recorded	not recorded	SRP392977	64.53
SRR21134060	whole body	whole body	not recorded	not recorded	SRP392977	47.14
SRR21134064	whole body	whole body	not recorded	not recorded	SRP392977	27.43
SRR21134050	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134051	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134052	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134053	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134054	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134055	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134057	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134058	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134059	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134061	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134062	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134063	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134065	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134066	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134067	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR10058806	Whole	Whole	not recorded	not recorded	SRP220397	42.22
SRR10058803	Whole	Whole	not recorded	not recorded	SRP220397	41.29
SRR10058802	Whole	Whole	not recorded	not recorded	SRP220397	40.33
SRR10058804	Whole	Whole	not recorded	not recorded	SRP220397	39.17
SRR10058807	Whole	Whole	not recorded	not recorded	SRP220397	39.04
SRR10058805	Whole	Whole	not recorded	not recorded	SRP220397	39.00
DRR048593	aposymbioic hydra M9 strain · aposymbioic hydra rep1	not recorded	not recorded	aposymbioic hydra rep1	DRP003902	32.40
DRR048594	aposymbioic hydra M9 strain · aposymbioic hydra rep2	not recorded	not recorded	aposymbioic hydra rep2	DRP003902	32.70
DRR048595	symbioic hydra M9 strain · symbioic hydra rep1	not recorded	not recorded	symbioic hydra rep1	DRP003902	31.35
DRR048596	symbioic hydra M9 strain · symbioic hydra rep2	not recorded	not recorded	symbioic hydra rep2	DRP003902	42.32
ERR13389755	unannotated	not recorded	not recorded	not recorded	ERP162636	0.00

Source: CnidoSite RNA-seq expression matrices (HVIRI_TPM, StringTie quantification over 29 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.