Gene detail

Detailed information of BRAKERKREP00000023747.1 in Hydra viridissima

Genomic Location: not available for this species
NR annotation: KAF1020080.1, Autoinducer 2 sensor kinase/phosphatase LuxQ [Pseudomonas sp.]
Species Hydra viridissima · all data for this species · gene families

Sequence

CDS

BRAKERKRET00000023747

ATGCAAAATAACACCCTTACGCGGATACGCGTCGCTATATTGGACGATCATGCGATCGTTCGTTATGGAATAGCCTTACGGCTGTCGCAGGAGCTAGACCTTTCTGTGGTAGGCAACTACGAAAACAGCCGCTCCATGATCGCCGGCCTGCGTACTGCGCCCGCAGACGTGCTGCTGGTCGATTACTCTTTAGGACCGTCCGAACTGGATGGCGTATCGCTTATCCGCGCACTTAGGCTTAAATTTCCCCAAAGCCAGGTGCTGGTGTTTTCCTCCCTTTATCATTCGGCTACGGTAGCGCTCGCGCTACGGGCGGGCGCAAGCGGCTTCGTGGGGAAAACCCACGACATGGACAAAGTCCTGTGCGCTATTCGTACGGTCGCCTCAGGGGCTGTCTATCTAGACACTGATATGTCATATCGTCTCGCGGACATTCGAGTCGCCGAAGTCGAAGACTCAGGCGAGGCGGACAGTTCTACCGCGCAATCTAAGCTTATTGCCGGCGCCCCTTTATCCGTGCGCGAGCATCAAGCACATGCTGGAAGAGTCATGAAACGCATGTCGGGTACGGTATTGGCGGCTGGCCTGCTGGCTGCTGCTCATGTAGACGTCCCTAGCACGCTTTCTCTCACCCCTGAAGAGCGAACTTGGATTAGCCAGCACCCTGTTATTCGCGTGGTGGTGGATCCCAAATGGAAACCGGTCCAGTACATCGAAAATGGCGTCTACAAAGGTCTGGCCTCCGAGTACCTAGCCGCTATTAGCCGTAGGACGGGCCTGCGGTTCAAATGGATAGCAGAAGAGCATTATTCTCTGGTCGCCAGTCGCCTGCAAAAAGGCGAGGCCGATATGCTACCGGTAGTGCAACGCCGATTCGCTCCGCCGGAGATCGCTCGCTTCATCACTTTCAGCGTGCCCTACTATGCCGGCACGACGCTGGCTATCACCCGTGATCATGCGCCGGTCATTTTCGAGCTCGCGCGACTTATCGGTAAACCGGTCGCCGTGCGAGTGGGCGGTGCTTACCACTCACGTTTACTCACCATGTGTACAGGCGTTCATGTGCTAGGGGTGCCAACGACCGAGGCGGCCCTGCTTGCGGTCGCCGAGGGAAAGGCAGAAGCCGCGCTGGACGCTGACGTCGCGCTTATTCCCTATTTACGCCGCCGCTACGACGGAGTGCTACACGTCTCCGGCGCTATTAGTACTCTGCCGGTCGAGCTTTCCATGGGCATACGAAACGACCTGCCCGTGTTGCGTTCGGTCATTGAAAAGGCGCTGGCTTCGCTCACGGCGGCGGAAACCGACGAGATGGACAAGCGTTGGCTGGAACAGACCGACTATGGCGCGCCGTCGTGGCCTGTGCTCATCCGCTACTACCGCTTGGAGATTATCCTCTCTCTTTTGGCACTGCTCACTATCATCGGTTTTGCGGCACATGCACAGCGGCAGCGGCACCGGGCTGTGCAAAGTGAAAAAGAGAAGTCCCTGTTTCTGGCTGTTATGGGCCATGAAATACGCTCACCCATGCATGCCATTTTGGCTTCGATGGAACTCTTACGCCGTTCGACGCTGCCGGCCAAGTCTCGCCGGCTTATCGATTCTGCGATGCGGGGCGCCGACAATTTGCTGCGTCTGTTGGACGATGTATTAGATCTTTCCAAGCTTGAGGCCGGGCGTCTAGAACTGGCACTGACGCCGTGTGATGTGTTGCAGAGTGTGCGTGAGGTCACCGATCTGCTTGAGGGAGAAGTTCGCGTACTGCTCTGGACTGACCCCATGCCCCACTATGCCGGTGCAGAAGTGCGACTGTATATCCGCGTCATCGACGCTGGTATAGGCATGGACGCGGCGCAAATGCGGCGTCTGTTCCATCCCTACGCGCAAGGCTCTCCCTCTACTTGGCGACGTTTTGGCGGCACTGGCTTGGGGCTAAGTATCTGCCGGCAGTTAGTTAATCTTATGCGCGGTTCCATCGACGTTCAAAGCGAGCCAGGGGGTGGTACGACCATCACGGTGGGCCTACCTTGCAAGGCAAGCGCGCCCATTGAAATCAAAACAAGTTCTCTAACAATTGCCCAAGAAGTCACCTCCGACGCCTGTCAACCAGCCACTGCACATGCAATGCTACGCATATTGCTGGTTGAGGACGCGCCGGCTAACCAGCTCGTGATGCAGGCCCAATTGGCAGAACTAGGCTGCAAGGTCAGCGTGGCTGCGGACGGCCCCACGGCGCTGCAAGAGCTAGAACAATCGGCGTACGACCTCGTCTTGCTCGATTGCGACCTGCCTCTTATTGATGGCTACACTGTGGCCCGCCAGTGGCGTAAGCGGGAAGCGCAGCGCGGCCAAACTCCTATACCCATCTTGGCCGTTTCCGGATACACCGATGTGAAGCATACCGCCGCCTGCCTAGACGCCGGCATGGACGCGGTATTAAGAAAACCCATCAGACTCAGTACGCTAGGCGACGCATTGCGACTGTGGTGTGATGCTGACATTGCCGCACCCAAGGCCGCGCCCGTATCAATGGGCTCCACTGAGCCGGTGCAGGCGCTCGCAGCGGATATTACGGCGTTGCGCGCTGCCCGTATGGCCCGCGACATGCGCGCTGTAATGCATTATTTACATCGCCTTTCGGGCGCTGCCGCTGTCGTAGGCGCTGATGTTCTAGCCCGCCGCGTCAAGGCCCTAGAAACAGATAAAACAGCCGGGGGCAACAGTCCCGTGCCCTTAGCCGAGCAAGACCTCGACGAGCTCGACGCCTTGCTGAAAGCCTGGGCAGCGCAGCGACCAGGCACTGGCTTACGCAGCCGGTAA

Transcript

BRAKERKRET00000023747

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9XH57	Ethylene receptor 2 OS=Pelargonium hortorum OX=4031 GN=ETR2 PE=2 SV=1
Q9KLK7	Autoinducer 2 sensor kinase/phosphatase LuxQ OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) OX=243277 GN=luxQ PE=1 SV=1
O81122	Ethylene receptor OS=Malus domestica OX=3750 GN=ETR1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006816 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02518 all species →	HATPase_c	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase	Domain	Interproscan
PF00512 all species →	HisKA	His Kinase A (phospho-acceptor) domain	Domain	Interproscan
PF00072 all species →	Response_reg	Response regulator receiver domain	Domain	Interproscan
PF01627 all species →	Hpt	Hpt domain	Family	Interproscan
PF00497 all species →	SBP_bac_3	Bacterial extracellular solute-binding proteins, family 3	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011006 all species →	Homologous_superfamily	CheY-like superfamily	Interproscan
IPR008207 all species →	Domain	Signal transduction histidine kinase, phosphotransfer (Hpt) domain	Interproscan
IPR003661 all species →	Domain	Signal transduction histidine kinase, dimerisation/phosphoacceptor domain	Interproscan
IPR001789 all species →	Domain	Signal transduction response regulator, receiver domain	Interproscan
IPR003594 all species →	Domain	Histidine kinase/HSP90-like ATPase	Interproscan
IPR004358 all species →	Domain	Signal transduction histidine kinase-related protein, C-terminal	Interproscan
IPR036641 all species →	Homologous_superfamily	HPT domain superfamily	Interproscan
IPR036890 all species →	Homologous_superfamily	Histidine kinase/HSP90-like ATPase superfamily	Interproscan
IPR001638 all species →	Domain	Solute-binding protein family 3/N-terminal domain of MltF	Interproscan
IPR005467 all species →	Domain	Histidine kinase domain	Interproscan
IPR036097 all species →	Homologous_superfamily	Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43047 all species →	TWO-COMPONENT HISTIDINE PROTEIN KINASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000160 all species →	Biological Process	phosphorelay signal transduction system	Interproscan
GO:0000155 all species →	Molecular Function	phosphorelay sensor kinase activity	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan
GO:0005887 all species →	Cellular Component	plasma membrane	Interproscan
GO:0009927 all species →	Molecular Function	histidine phosphotransfer kinase activity	Interproscan
GO:0046777 all species →	Biological Process	protein autophosphorylation	Interproscan
GO:0016310 all species →	Biological Process	phosphorylation	Interproscan
GO:0016772 all species →	Molecular Function	transferase activity, transferring phosphorus-containing groups	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERKREP00000023747.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of BRAKERKREP00000023747.1 across 29 RNA-seq samples of Hydra viridissima. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

29Samples

2TPM > 0

7Conditions

5.7Max TPM

0.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole body	18	1	0.32	5.69
Whole	6	0	0.00	0.00
aposymbioic hydra M9 strain · aposymbioic hydra rep1	1	0	0.00	0.00
aposymbioic hydra M9 strain · aposymbioic hydra rep2	1	0	0.00	0.00
symbioic hydra M9 strain · symbioic hydra rep1	1	1	2.29	2.29
symbioic hydra M9 strain · symbioic hydra rep2	1	0	0.00	0.00
unannotated	1	0	0.00	0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR21134060	whole body	whole body	not recorded	not recorded	SRP392977	5.69
SRR21134050	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134051	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134052	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134053	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134054	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134055	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134056	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134057	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134058	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134059	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134061	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134062	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134063	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134064	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134065	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134066	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134067	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR10058802	Whole	Whole	not recorded	not recorded	SRP220397	0.00
SRR10058803	Whole	Whole	not recorded	not recorded	SRP220397	0.00
SRR10058804	Whole	Whole	not recorded	not recorded	SRP220397	0.00
SRR10058805	Whole	Whole	not recorded	not recorded	SRP220397	0.00
SRR10058806	Whole	Whole	not recorded	not recorded	SRP220397	0.00
SRR10058807	Whole	Whole	not recorded	not recorded	SRP220397	0.00
DRR048593	aposymbioic hydra M9 strain · aposymbioic hydra rep1	not recorded	not recorded	aposymbioic hydra rep1	DRP003902	0.00
DRR048594	aposymbioic hydra M9 strain · aposymbioic hydra rep2	not recorded	not recorded	aposymbioic hydra rep2	DRP003902	0.00
DRR048595	symbioic hydra M9 strain · symbioic hydra rep1	not recorded	not recorded	symbioic hydra rep1	DRP003902	2.29
DRR048596	symbioic hydra M9 strain · symbioic hydra rep2	not recorded	not recorded	symbioic hydra rep2	DRP003902	0.00
ERR13389755	unannotated	not recorded	not recorded	not recorded	ERP162636	0.00

Source: CnidoSite RNA-seq expression matrices (HVIRI_TPM, StringTie quantification over 29 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.