Gene detail

Detailed information of BRAKERKREP00000023830.1 in Hydra viridissima

Genomic Location: not available for this species
NR annotation: WP_251864721.1, DNA-3-methyladenine glycosylase [Achromobacter sp. Marseille-Q4962]
Species abbreviation HVIRI · all data for this species · gene families

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q92383	DNA-3-methyladenine glycosylase 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=mag1 PE=1 SV=1
O94468	Alkylbase DNA glycosidase-like protein mag2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=mag2 PE=1 SV=1
P22134	DNA-3-methyladenine glycosylase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=MAG1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0048673 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00730 all species →	HhH-GPD	HhH-GPD superfamily base excision DNA repair protein	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003265 all species →	Domain	HhH-GPD domain	Interproscan
IPR051912 all species →	Family	Alkylbase DNA Glycosylase/Transcriptional Activator	Interproscan
IPR011257 all species →	Homologous_superfamily	DNA glycosylase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43003 all species →	DNA-3-METHYLADENINE GLYCOSYLASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006284 all species →	Biological Process	base-excision repair	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006285 all species →	Biological Process	base-excision repair, AP site formation	Interproscan
GO:0006307 all species →	Biological Process	DNA alkylation repair	Interproscan
GO:0008725 all species →	Molecular Function	DNA-3-methyladenine glycosylase activity	Interproscan
GO:0032131 all species →	Molecular Function	alkylated DNA binding	Interproscan
GO:0032993 all species →	Cellular Component	protein-DNA complex	Interproscan
GO:0043916 all species →	Molecular Function	DNA-7-methylguanine glycosylase activity	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0006281 all species →	Biological Process	DNA repair	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01247	alkA; DNA-3-methyladenine glycosylase II	EC:3.2.2.21	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.