Detailed information of BRAKERKREP00000023883.1 in Hydra viridissima

Genomic Location: not available for this species
NR annotation: MBS0323324.1, SDR family NAD(P)-dependent oxidoreductase [Pseudomonadota bacterium]
Species Hydra viridissima · all data for this species · gene families

 Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
A0A6S5ZY48Highly reducing polyketide synthase g433 OS=Fusarium sp. OX=29916 GN=g433 PE=2 SV=1
I1RVD8Highly reducing polyketide synthase PKS6 OS=Gibberella zeae (strain ATCC MYA-4620 / CBS 123657 / FGSC 9075 / NRRL 31084 / PH-1) OX=229533 GN=PKS6 PE=3 SV=1
W7MT31Reducing polyketide synthase FUB1 OS=Gibberella moniliformis (strain M3125 / FGSC 7600) OX=334819 GN=FUB1 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0003022 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF21089
all species →
PKS_DH_NPolyketide synthase dehydratase domainDomainInterproscan
PF02801
all species →
Ketoacyl-synt_CBeta-ketoacyl synthase, C-terminal domainDomainInterproscan
PF08242
all species →
Methyltransf_12Methyltransferase domainDomainInterproscan
PF13602
all species →
ADH_zinc_N_2Zinc-binding dehydrogenaseDomainInterproscan
PF00155
all species →
Aminotran_1_2Aminotransferase class I and IIDomainInterproscan
PF00698
all species →
Acyl_transf_1Acyl transferase domainDomainInterproscan
PF14765
all species →
PS-DHPolyketide synthase dehydratase N-terminal domainDomainInterproscan
PF16197
all species →
KAsynt_C_assocKetoacyl-synthetase C-terminal extensionFamilyInterproscan
PF00550
all species →
PP-bindingPhosphopantetheine attachment siteDomainInterproscan
PF08659
all species →
KRKR domainFamilyInterproscan
PF00109
all species →
ketoacyl-syntBeta-ketoacyl synthase, N-terminal domainDomainInterproscan
PF08240
all species →
ADH_NAlcohol dehydrogenase GroES-like domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR049552
all species →
DomainPolyketide synthase, dehydratase domain, N-terminalInterproscan
IPR014031
all species →
DomainBeta-ketoacyl synthase, C-terminalInterproscan
IPR013217
all species →
DomainMethyltransferase type 12Interproscan
IPR029063
all species →
Homologous_superfamilyS-adenosyl-L-methionine-dependent methyltransferase superfamilyInterproscan
IPR014043
all species →
DomainAcyl transferaseInterproscan
IPR020807
all species →
DomainPolyketide synthase, dehydratase domainInterproscan
IPR018201
all species →
Active_siteBeta-ketoacyl synthase, active siteInterproscan
IPR016039
all species →
Homologous_superfamilyThiolase-likeInterproscan
IPR004839
all species →
DomainAminotransferase, class I/classIIInterproscan
IPR050091
all species →
FamilyPolyketide and Nonribosomal Peptide Biosynthesis EnzymesInterproscan
IPR049551
all species →
DomainPolyketide synthase, dehydratase domain, C-terminalInterproscan
IPR032821
all species →
DomainPolyketide synthase, C-terminal extensionInterproscan
IPR009081
all species →
DomainPhosphopantetheine binding ACP domainInterproscan
IPR013968
all species →
DomainPolyketide synthase, ketoreductase domainInterproscan
IPR036736
all species →
Homologous_superfamilyACP-like superfamilyInterproscan
IPR036291
all species →
Homologous_superfamilyNAD(P)-binding domain superfamilyInterproscan
IPR014030
all species →
DomainBeta-ketoacyl synthase, N-terminalInterproscan
IPR049900
all species →
DomainPolyketide/metazoan fatty acid synthase, dehydratase domainInterproscan
IPR015421
all species →
Homologous_superfamilyPyridoxal phosphate-dependent transferase, major domainInterproscan
IPR015422
all species →
Homologous_superfamilyPyridoxal phosphate-dependent transferase, small domainInterproscan
IPR020841
all species →
DomainPolyketide synthase, beta-ketoacyl synthase domainInterproscan
IPR002364
all species →
Conserved_siteQuinone oxidoreductase/zeta-crystallin, conserved siteInterproscan
IPR020806
all species →
DomainPolyketide synthase, phosphopantetheine-binding domainInterproscan
IPR020843
all species →
DomainPolyketide synthase, enoylreductase domainInterproscan
IPR013154
all species →
DomainAlcohol dehydrogenase-like, N-terminalInterproscan
IPR011032
all species →
Homologous_superfamilyGroES-like superfamilyInterproscan
IPR001227
all species →
Homologous_superfamilyAcyl transferase domain superfamilyInterproscan
IPR042104
all species →
Homologous_superfamilyPolyketide synthase, dehydratase domain superfamilyInterproscan
IPR016036
all species →
Homologous_superfamilyMalonyl-CoA ACP transacylase, ACP-bindingInterproscan
IPR015424
all species →
Homologous_superfamilyPyridoxal phosphate-dependent transferaseInterproscan
IPR016035
all species →
Homologous_superfamilyAcyl transferase/acyl hydrolase/lysophospholipaseInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR43775
all species →
FATTY ACID SYNTHASEInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0004315
all species →
Molecular Function3-oxoacyl-[acyl-carrier-protein] synthase activityInterproscan
GO:0006633
all species →
Biological Processfatty acid biosynthetic processInterproscan
GO:0016746
all species →
Molecular Functionacyltransferase activityInterproscan
GO:0009058
all species →
Biological Processbiosynthetic processInterproscan
GO:0030170
all species →
Molecular Functionpyridoxal phosphate bindingInterproscan
GO:0004312
all species →
Molecular Functionfatty acid synthase activityInterproscan
GO:0008270
all species →
Molecular Functionzinc ion bindingInterproscan
GO:0016491
all species →
Molecular Functionoxidoreductase activityInterproscan
GO:0031177
all species →
Molecular Functionphosphopantetheine bindingInterproscan
GO:0016740
all species →
Molecular Functiontransferase activityInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for BRAKERKREP00000023883.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of BRAKERKREP00000023883.1 across 29 RNA-seq samples of Hydra viridissima. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

29Samples
13TPM > 0
7Conditions
32.3Max TPM
9.4Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
whole body 18 4 3.71 28.15
Whole 6 5 20.84 32.31
aposymbioic hydra M9 strain · aposymbioic hydra rep1 1 1 17.46 17.46
aposymbioic hydra M9 strain · aposymbioic hydra rep2 1 1 18.73 18.73
symbioic hydra M9 strain · symbioic hydra rep1 1 1 17.67 17.67
symbioic hydra M9 strain · symbioic hydra rep2 1 1 26.07 26.07
unannotated 1 0 0.00 0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (HVIRI_TPM, StringTie quantification over 29 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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