Genomic Location: not available for this species
NR annotation: MBS0323324.1, SDR family NAD(P)-dependent oxidoreductase [Pseudomonadota bacterium]
Species Hydra viridissima · all data for this species · gene families
| CDS |
| BRAKERKRET00000023883 |
| Transcript |
| BRAKERKRET00000023883 |
| Protein |
| BRAKERKREP00000023883.1 |
| UniProt accession | Description |
|---|---|
| A0A6S5ZY48 | Highly reducing polyketide synthase g433 OS=Fusarium sp. OX=29916 GN=g433 PE=2 SV=1 |
| I1RVD8 | Highly reducing polyketide synthase PKS6 OS=Gibberella zeae (strain ATCC MYA-4620 / CBS 123657 / FGSC 9075 / NRRL 31084 / PH-1) OX=229533 GN=PKS6 PE=3 SV=1 |
| W7MT31 | Reducing polyketide synthase FUB1 OS=Gibberella moniliformis (strain M3125 / FGSC 7600) OX=334819 GN=FUB1 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0003022 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF21089 all species → | PKS_DH_N | Polyketide synthase dehydratase domain | Domain | Interproscan |
| PF02801 all species → | Ketoacyl-synt_C | Beta-ketoacyl synthase, C-terminal domain | Domain | Interproscan |
| PF08242 all species → | Methyltransf_12 | Methyltransferase domain | Domain | Interproscan |
| PF13602 all species → | ADH_zinc_N_2 | Zinc-binding dehydrogenase | Domain | Interproscan |
| PF00155 all species → | Aminotran_1_2 | Aminotransferase class I and II | Domain | Interproscan |
| PF00698 all species → | Acyl_transf_1 | Acyl transferase domain | Domain | Interproscan |
| PF14765 all species → | PS-DH | Polyketide synthase dehydratase N-terminal domain | Domain | Interproscan |
| PF16197 all species → | KAsynt_C_assoc | Ketoacyl-synthetase C-terminal extension | Family | Interproscan |
| PF00550 all species → | PP-binding | Phosphopantetheine attachment site | Domain | Interproscan |
| PF08659 all species → | KR | KR domain | Family | Interproscan |
| PF00109 all species → | ketoacyl-synt | Beta-ketoacyl synthase, N-terminal domain | Domain | Interproscan |
| PF08240 all species → | ADH_N | Alcohol dehydrogenase GroES-like domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR049552 all species → | Domain | Polyketide synthase, dehydratase domain, N-terminal | Interproscan |
| IPR014031 all species → | Domain | Beta-ketoacyl synthase, C-terminal | Interproscan |
| IPR013217 all species → | Domain | Methyltransferase type 12 | Interproscan |
| IPR029063 all species → | Homologous_superfamily | S-adenosyl-L-methionine-dependent methyltransferase superfamily | Interproscan |
| IPR014043 all species → | Domain | Acyl transferase | Interproscan |
| IPR020807 all species → | Domain | Polyketide synthase, dehydratase domain | Interproscan |
| IPR018201 all species → | Active_site | Beta-ketoacyl synthase, active site | Interproscan |
| IPR016039 all species → | Homologous_superfamily | Thiolase-like | Interproscan |
| IPR004839 all species → | Domain | Aminotransferase, class I/classII | Interproscan |
| IPR050091 all species → | Family | Polyketide and Nonribosomal Peptide Biosynthesis Enzymes | Interproscan |
| IPR049551 all species → | Domain | Polyketide synthase, dehydratase domain, C-terminal | Interproscan |
| IPR032821 all species → | Domain | Polyketide synthase, C-terminal extension | Interproscan |
| IPR009081 all species → | Domain | Phosphopantetheine binding ACP domain | Interproscan |
| IPR013968 all species → | Domain | Polyketide synthase, ketoreductase domain | Interproscan |
| IPR036736 all species → | Homologous_superfamily | ACP-like superfamily | Interproscan |
| IPR036291 all species → | Homologous_superfamily | NAD(P)-binding domain superfamily | Interproscan |
| IPR014030 all species → | Domain | Beta-ketoacyl synthase, N-terminal | Interproscan |
| IPR049900 all species → | Domain | Polyketide/metazoan fatty acid synthase, dehydratase domain | Interproscan |
| IPR015421 all species → | Homologous_superfamily | Pyridoxal phosphate-dependent transferase, major domain | Interproscan |
| IPR015422 all species → | Homologous_superfamily | Pyridoxal phosphate-dependent transferase, small domain | Interproscan |
| IPR020841 all species → | Domain | Polyketide synthase, beta-ketoacyl synthase domain | Interproscan |
| IPR002364 all species → | Conserved_site | Quinone oxidoreductase/zeta-crystallin, conserved site | Interproscan |
| IPR020806 all species → | Domain | Polyketide synthase, phosphopantetheine-binding domain | Interproscan |
| IPR020843 all species → | Domain | Polyketide synthase, enoylreductase domain | Interproscan |
| IPR013154 all species → | Domain | Alcohol dehydrogenase-like, N-terminal | Interproscan |
| IPR011032 all species → | Homologous_superfamily | GroES-like superfamily | Interproscan |
| IPR001227 all species → | Homologous_superfamily | Acyl transferase domain superfamily | Interproscan |
| IPR042104 all species → | Homologous_superfamily | Polyketide synthase, dehydratase domain superfamily | Interproscan |
| IPR016036 all species → | Homologous_superfamily | Malonyl-CoA ACP transacylase, ACP-binding | Interproscan |
| IPR015424 all species → | Homologous_superfamily | Pyridoxal phosphate-dependent transferase | Interproscan |
| IPR016035 all species → | Homologous_superfamily | Acyl transferase/acyl hydrolase/lysophospholipase | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR43775 all species → | FATTY ACID SYNTHASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0004315 all species → | Molecular Function | 3-oxoacyl-[acyl-carrier-protein] synthase activity | Interproscan |
| GO:0006633 all species → | Biological Process | fatty acid biosynthetic process | Interproscan |
| GO:0016746 all species → | Molecular Function | acyltransferase activity | Interproscan |
| GO:0009058 all species → | Biological Process | biosynthetic process | Interproscan |
| GO:0030170 all species → | Molecular Function | pyridoxal phosphate binding | Interproscan |
| GO:0004312 all species → | Molecular Function | fatty acid synthase activity | Interproscan |
| GO:0008270 all species → | Molecular Function | zinc ion binding | Interproscan |
| GO:0016491 all species → | Molecular Function | oxidoreductase activity | Interproscan |
| GO:0031177 all species → | Molecular Function | phosphopantetheine binding | Interproscan |
| GO:0016740 all species → | Molecular Function | transferase activity | Interproscan |
BRAKERKREP00000023883.1.Transcript abundance of BRAKERKREP00000023883.1 across 29 RNA-seq samples of Hydra viridissima. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole body | 18 | 4 | 3.71 | 28.15 | |
| Whole | 6 | 5 | 20.84 | 32.31 | |
| aposymbioic hydra M9 strain · aposymbioic hydra rep1 | 1 | 1 | 17.46 | 17.46 | |
| aposymbioic hydra M9 strain · aposymbioic hydra rep2 | 1 | 1 | 18.73 | 18.73 | |
| symbioic hydra M9 strain · symbioic hydra rep1 | 1 | 1 | 17.67 | 17.67 | |
| symbioic hydra M9 strain · symbioic hydra rep2 | 1 | 1 | 26.07 | 26.07 | |
| unannotated | 1 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (HVIRI_TPM,
StringTie quantification over 29 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.