Gene detail

Detailed information of BRAKERKREP00000023890.1 in Hydra viridissima

Genomic Location: :...
NR annotation: KND56462.1, CTP synthase [Candidatus Paraburkholderia kirkii]

Gene Structure

More details in Jbrowse

Sequence

CDS

BRAKERKRET00000023890

ATGACCAAGTACGTATTTGTCACCGGTGGTGTGGTGTCTTCCCTGGGCAAGGGCATCACCGCCGCGTCGCTTGCCGCTATTCTTGAATCGCGCGGCCTGCAAGTTACTCTGCTTAAGCTGGATCCCTATATCAACGTGGATCCTGGCACCATGAACCCCTTTCAGCACGGTGAAGTCTTCGTGACAGAAGATGGGGCTGAGACCGATCTAGACCTTGGCCATTACGAGCGGTTTATCTCTGCCCGTATGCGTAAGTCGAATAACTTTACCACCGGGCAGATTTATGAATCCGTGCTGCGCAAAGAGCGCCGCGGTGACTATCTGGGCAAAACCGTACAGGTAATTCCGCACATTACCAATGAAATCCAGGACTTTATCGCGCGCGGCGCAGCTGCCTCGTTTGATACCGAGACCGACGTGGCAATTGTTGAAATTGGCGGTACGGTGGGCGACATTGAATCACTGCCATTTTTAGAAGCCGCGCGCCAAATGAGTCTACGTCTTGGGCGCAATAATGCCGCCTTTGTGCACTTGACGCTGGTCCCGTTCATTGCCTCAGCCGGCGAGCTGAAGACCAAACCCACGCAACATTCCGTCCAAAAGCTGCGCGAGATAGGCATTTATCCGAACGCGCTACTCTGCCGCGCCGACCGCCCTGTTCCCGCTGAAGAGCGAGCCAAGATCTCGTTGTTTTCTAACGTACCCTTGGACGCAGTGATTTCAGTGTGGGACGCCGactctatttataaaattcctTCGATGCTGCACCAGCAAGGTTTGGATAATTTGGTTTGTGATGCGTTGGCGTTAACGCCGCCGCCGGCCGACTTGTCTATGTGGGACAACTTGGTTGAGGCGCTTGAACAACCATCGCACGAGCTCATCATAGGCATGGTCGGCAAATATGTTGACCTCACCGAGTCATACAAGTCGTTGAGTGAGGCACTGGTGCACGCGGGGATTCATACCCGCGCTAAGGTGAAAATTGAGTATATCGATTCGGAAGAAATCGAGACGCGCGGCACCGACCCACTTAAGCACTTAGATGGGATTCTGGTGCCGGGTGGCTTTGGGCAGCGCGGTATCGAAGGAAAAATTGCTGCCATACGCTACGCGCGCGAAAAGGGCGTGCCTTACTTAGGGATTTGCTTGGGTATGCAGCTGGCTGTTATTGAGTTTGCCCGCCATGTGGCGGGTTTAGACGGCGCCAATAGTACTGAATTCGATCCTGCAGCGCCCCATCCCGTGGTGGCGCTGATCACCGAGTGGAGAGATCGCGAGGGCCGGGTTGAACGGCGCAACACGCAGTCCGATTTAGGCGGCACCATGCGTAAGGGCGCTCAACGCTGTCCCATTAAAAGCGGCACGCGTGCACAAGCCATTTATGGCGAAGAAGTCAACGAGCGCCACCGGCATCGCTACGAAGTCAATAACGTCTACGTGCCCCGGTTGGAAGCAACGGGCCGCTTTCGAATACCAAAAGCGACGTACCAAGGAAACATAATGAATATCCTTGGTCGTGCCATTGGCTTAGAGCATCCTTTTTTTCTGATTGCGGGTCCCTGCGTGGTCGAGTCGCGTGAGCTGGCTTTTGAAACCGCGGGTCGGCTGAAGGAAATTACCGATCAGTTAGGTATTACCTTTATCTACAAAAGCTCCTTCGATAAGGCGAATCGTAGTTCGGGCGGTTCGTATCGCGGGCCAGGTATGGACGAAGGGCTAAAGATTCTGGCCGATGTGCGTCGCCAGTTAAATGTGCCGGTGCTCACCGACGTCCACGAGGTGGCTCAGGTGGCGCCAGTGGCGGCGGTAGTAGATATGCTGCAAACGCCCGCTTTTCTGTGTCGCCAAACTGACTTTATTCGGGCTTGCGCGGCCACGAATAAACCCGTGAATATTAAGAAAGGCCAGTTTCTCGCACCGCACGACATGCAGCAGGTGGTGCAGAAGGCACGCGCCGCGGCGATTGAGGCCGGCGGCGATGGCGCTAACATCCTAGTTTGTGAGCGCGGTGCTTCATTTGGCTACAACAATCTGGTGGTTGATATGCGTTCACTGGCCATTCTGCGGCAGACAGGCTGTCCTGTGGTGTTCGATGCCACCCATTCAGTGCAGTTGCCTGGCGCCCAAGGAACTTCCTCAGGGGCGGAGCGTGAGTTCGTGCCGGTGCTGGCGCGAGCGGCGGTGGCGGTGGGTGTTGCGGGCCTCTTTATGGAGACGCATCCTAATCCGGCCTGCGCTTTGTCCGATGGCCCTAATGCGGTGCCCCTAGACGCCATGGCGGCTTTGCTGGGCTCGCTGCTAGAAGTAGACCGTGTGACAAAGCGTTTAGGTTTTCTTGAAAACACGTTTGTTTAG

Transcript

BRAKERKRET00000023890

Protein

Uniprot

Uniprot term	Description
A9IIP5	CTP synthase OS=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) OX=340100 GN=pyrG PE=3 SV=1
Q7WD72	CTP synthase OS=Bordetella bronchiseptica (strain ATCC BAA-588 / NCTC 13252 / RB50) OX=257310 GN=pyrG PE=3 SV=1
Q7W5N6	CTP synthase OS=Bordetella parapertussis (strain 12822 / ATCC BAA-587 / NCTC 13253) OX=257311 GN=pyrG PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00793	DAHP_synth_1	DAHP synthetase I family	Domain	Interproscan
PF00117	GATase	Glutamine amidotransferase class-I	Domain	Interproscan
PF06418	CTP_synth_N	CTP synthase N-terminus	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013785	Homologous_superfamily	Aldolase-type TIM barrel	Interproscan
IPR004468	Family	CTP synthase	Interproscan
IPR029062	Homologous_superfamily	Class I glutamine amidotransferase-like	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR017456	Domain	CTP synthase, N-terminal	Interproscan
IPR006218	Domain	DAHP synthetase I/KDSA	Interproscan
IPR017926	Domain	Glutamine amidotransferase	Interproscan
IPR033828	Domain	CTP synthase GATase domain	Interproscan
IPR006269	Family	3-deoxy-8-phosphooctulonate synthase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11550	CTP SYNTHASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003883	Molecular Function	CTP synthase activity	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0006221	Biological Process	pyrimidine nucleotide biosynthetic process	Interproscan
GO:0006241	Biological Process	CTP biosynthetic process	Interproscan
GO:0019856	Biological Process	pyrimidine nucleobase biosynthetic process	Interproscan
GO:0042802	Molecular Function	identical protein binding	Interproscan
GO:0009058	Biological Process	biosynthetic process	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0008676	Molecular Function	3-deoxy-8-phosphooctulonate synthase activity	Interproscan