Gene detail

Detailed information of BRAKERKREP00000023892.1 in Hydra viridissima

Genomic Location: QPEY01000524.1:606503...607129
NR annotation: WP_054429311.1, MULTISPECIES: HAD hydrolase-like protein [Achromobacter]
Species Hydra viridissima · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q55039	Phosphoglycolate phosphatase OS=Synechococcus elongatus (strain ATCC 33912 / PCC 7942 / FACHB-805) OX=1140 GN=cbbZ PE=3 SV=2
P68910	Tyrosine-protein kinase PtkA OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) OX=233413 GN=ptkA PE=3 SV=1
P9WPI8	Tyrosine-protein kinase PtkA OS=Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh) OX=83331 GN=ptkA PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13419 all species →	HAD_2	Haloacid dehalogenase-like hydrolase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR041492 all species →	Family	Haloacid dehalogenase-like hydrolase	Interproscan
IPR023214 all species →	Homologous_superfamily	HAD superfamily	Interproscan
IPR023198 all species →	Homologous_superfamily	Phosphoglycolate phosphatase-like, domain 2	Interproscan
IPR036412 all species →	Homologous_superfamily	HAD-like superfamily	Interproscan
IPR050155 all species →	Family	HAD-like hydrolase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43434 all species →	PHOSPHOGLYCOLATE PHOSPHATASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0006281 all species →	Biological Process	DNA repair	Interproscan
GO:0008967 all species →	Molecular Function	phosphoglycolate phosphatase activity	Interproscan
GO:0016311 all species →	Biological Process	dephosphorylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01091	gph; phosphoglycolate phosphatase	EC:3.1.3.18	Glyoxylate and dicarboxylate metabolism	ko00630	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of BRAKERKREP00000023892.1 across 29 RNA-seq samples of Hydra viridissima. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

29Samples

1TPM > 0

7Conditions

0.0Max TPM

0.0Mean TPM

By condition

Condition	Samples	TPM > 0
whole body	18	0
Whole	6	1
aposymbioic hydra M9 strain · aposymbioic hydra rep1	1	0
aposymbioic hydra M9 strain · aposymbioic hydra rep2	1	0
symbioic hydra M9 strain · symbioic hydra rep1	1	0
symbioic hydra M9 strain · symbioic hydra rep2	1	0
unannotated	1	0

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study
SRR21134050	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134051	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134052	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134053	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134054	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134055	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134056	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134057	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134058	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134059	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134060	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134061	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134062	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134063	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134064	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134065	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134066	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134067	whole body	whole body	not recorded	not recorded	SRP392977
SRR10058806	Whole	Whole	not recorded	not recorded	SRP220397
SRR10058802	Whole	Whole	not recorded	not recorded	SRP220397
SRR10058803	Whole	Whole	not recorded	not recorded	SRP220397
SRR10058804	Whole	Whole	not recorded	not recorded	SRP220397
SRR10058805	Whole	Whole	not recorded	not recorded	SRP220397
SRR10058807	Whole	Whole	not recorded	not recorded	SRP220397
DRR048593	aposymbioic hydra M9 strain · aposymbioic hydra rep1	not recorded	not recorded	aposymbioic hydra rep1	DRP003902
DRR048594	aposymbioic hydra M9 strain · aposymbioic hydra rep2	not recorded	not recorded	aposymbioic hydra rep2	DRP003902
DRR048595	symbioic hydra M9 strain · symbioic hydra rep1	not recorded	not recorded	symbioic hydra rep1	DRP003902
DRR048596	symbioic hydra M9 strain · symbioic hydra rep2	not recorded	not recorded	symbioic hydra rep2	DRP003902
ERR13389755	unannotated	not recorded	not recorded	not recorded	ERP162636

Source: CnidoSite RNA-seq expression matrices (HVIRI_TPM, StringTie quantification over 29 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.