Gene detail

Detailed information of BRAKERKREP00000023919.1 in Hydra viridissima

Genomic Location: not available for this species
NR annotation: WP_049076772.1, MULTISPECIES: YbdK family carboxylate-amine ligase [Achromobacter]
Species Hydra viridissima · all data for this species · gene families

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A9IFL0	Putative glutamate--cysteine ligase 2 OS=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) OX=340100 GN=Bpet4705 PE=3 SV=1
Q7WQP1	Putative glutamate--cysteine ligase 2 OS=Bordetella bronchiseptica (strain ATCC BAA-588 / NCTC 13252 / RB50) OX=257310 GN=BB0289 PE=3 SV=1
Q7W1R5	Putative glutamate--cysteine ligase 2 OS=Bordetella parapertussis (strain 12822 / ATCC BAA-587 / NCTC 13253) OX=257311 GN=BPP0286 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0048569 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04107 all species →	GCS2	Glutamate-cysteine ligase family 2(GCS2)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050141 all species →	Family	Glutamate--cysteine ligase type 2, YbdK subfamily	Interproscan
IPR006336 all species →	Family	Glutamate--cysteine ligase, GCS2	Interproscan
IPR011793 all species →	Family	Putative glutamate--cysteine ligase YbdK	Interproscan
IPR014746 all species →	Homologous_superfamily	Glutamine synthetase/guanido kinase, catalytic domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR36510 all species →	GLUTAMATE--CYSTEINE LIGASE 2-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016879 all species →	Molecular Function	ligase activity, forming carbon-nitrogen bonds	Interproscan
GO:0004357 all species →	Molecular Function	glutamate-cysteine ligase activity	Interproscan
GO:0042398 all species →	Biological Process	modified amino acid biosynthetic process	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K06048	gshA, ybdK; glutamate---cysteine ligase / carboxylate-amine ligase	EC:6.3.2.2 EC:6.3.-.-	Glutathione metabolism	ko00480	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of BRAKERKREP00000023919.1 across 29 RNA-seq samples of Hydra viridissima. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

29Samples

5TPM > 0

7Conditions

15.7Max TPM

2.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole body	18	0	0.00	0.00
Whole	6	5	10.10	15.69
aposymbioic hydra M9 strain · aposymbioic hydra rep1	1	0	0.00	0.00
aposymbioic hydra M9 strain · aposymbioic hydra rep2	1	0	0.00	0.00
symbioic hydra M9 strain · symbioic hydra rep1	1	0	0.00	0.00
symbioic hydra M9 strain · symbioic hydra rep2	1	0	0.00	0.00
unannotated	1	0	0.00	0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR21134050	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134051	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134052	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134053	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134054	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134055	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134056	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134057	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134058	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134059	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134060	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134061	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134062	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134063	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134064	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134065	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134066	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134067	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR10058803	Whole	Whole	not recorded	not recorded	SRP220397	15.69
SRR10058806	Whole	Whole	not recorded	not recorded	SRP220397	12.94
SRR10058805	Whole	Whole	not recorded	not recorded	SRP220397	11.28
SRR10058804	Whole	Whole	not recorded	not recorded	SRP220397	10.57
SRR10058807	Whole	Whole	not recorded	not recorded	SRP220397	10.14
SRR10058802	Whole	Whole	not recorded	not recorded	SRP220397	0.00
DRR048593	aposymbioic hydra M9 strain · aposymbioic hydra rep1	not recorded	not recorded	aposymbioic hydra rep1	DRP003902	0.00
DRR048594	aposymbioic hydra M9 strain · aposymbioic hydra rep2	not recorded	not recorded	aposymbioic hydra rep2	DRP003902	0.00
DRR048595	symbioic hydra M9 strain · symbioic hydra rep1	not recorded	not recorded	symbioic hydra rep1	DRP003902	0.00
DRR048596	symbioic hydra M9 strain · symbioic hydra rep2	not recorded	not recorded	symbioic hydra rep2	DRP003902	0.00
ERR13389755	unannotated	not recorded	not recorded	not recorded	ERP162636	0.00

Source: CnidoSite RNA-seq expression matrices (HVIRI_TPM, StringTie quantification over 29 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.