Gene detail

Detailed information of BRAKERKREP00000023922.1 in Hydra viridissima

Genomic Location: QPEY01000524.1:1836679...1837371
NR annotation: WP_183011982.1, flagellar assembly protein FliH [Achromobacter sp. UMC46]
Species Hydra viridissima · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02108 all species →	FliH	Flagellar assembly protein FliH	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000563 all species →	Family	Flagellar assembly protein FliH	Interproscan
IPR051472 all species →	Family	Type III Secretion System Stator and Flagellar Assembly	Interproscan
IPR018035 all species →	Domain	Flagellar assembly protein FliH/Type III secretion system HrpE	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR34982 all species →	YOP PROTEINS TRANSLOCATION PROTEIN L	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003774 all species →	Molecular Function	cytoskeletal motor activity	Interproscan
GO:0009288 all species →	Cellular Component	bacterial-type flagellum	Interproscan
GO:0071973 all species →	Biological Process	bacterial-type flagellum-dependent cell motility	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02411	fliH; flagellar assembly protein FliH	-	Bacterial motility proteins	ko02035	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of BRAKERKREP00000023922.1 across 29 RNA-seq samples of Hydra viridissima. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

29Samples

14TPM > 0

7Conditions

54.1Max TPM

10.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole body	18	5	7.79	54.07
Whole	6	6	22.47	27.64
aposymbioic hydra M9 strain · aposymbioic hydra rep1	1	1	14.78	14.78
aposymbioic hydra M9 strain · aposymbioic hydra rep2	1	1	11.51	11.51
symbioic hydra M9 strain · symbioic hydra rep1	1	1	6.07	6.07
symbioic hydra M9 strain · symbioic hydra rep2	1	0	0.00	0.00
unannotated	1	0	0.00	0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR21134053	whole body	whole body	not recorded	not recorded	SRP392977	54.07
SRR21134052	whole body	whole body	not recorded	not recorded	SRP392977	32.80
SRR21134064	whole body	whole body	not recorded	not recorded	SRP392977	29.52
SRR21134060	whole body	whole body	not recorded	not recorded	SRP392977	17.64
SRR21134055	whole body	whole body	not recorded	not recorded	SRP392977	6.24
SRR21134050	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134051	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134054	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134056	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134057	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134058	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134059	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134061	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134062	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134063	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134065	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134066	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134067	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR10058805	Whole	Whole	not recorded	not recorded	SRP220397	27.64
SRR10058803	Whole	Whole	not recorded	not recorded	SRP220397	24.76
SRR10058807	Whole	Whole	not recorded	not recorded	SRP220397	22.93
SRR10058804	Whole	Whole	not recorded	not recorded	SRP220397	21.59
SRR10058802	Whole	Whole	not recorded	not recorded	SRP220397	21.28
SRR10058806	Whole	Whole	not recorded	not recorded	SRP220397	16.63
DRR048593	aposymbioic hydra M9 strain · aposymbioic hydra rep1	not recorded	not recorded	aposymbioic hydra rep1	DRP003902	14.78
DRR048594	aposymbioic hydra M9 strain · aposymbioic hydra rep2	not recorded	not recorded	aposymbioic hydra rep2	DRP003902	11.51
DRR048595	symbioic hydra M9 strain · symbioic hydra rep1	not recorded	not recorded	symbioic hydra rep1	DRP003902	6.07
DRR048596	symbioic hydra M9 strain · symbioic hydra rep2	not recorded	not recorded	symbioic hydra rep2	DRP003902	0.00
ERR13389755	unannotated	not recorded	not recorded	not recorded	ERP162636	0.00

Source: CnidoSite RNA-seq expression matrices (HVIRI_TPM, StringTie quantification over 29 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.