Gene detail

Detailed information of BRAKERKREP00000023933.1 in Hydra viridissima

Genomic Location: not available for this species
NR annotation: WP_212318107.1, aminopeptidase N [Achromobacter sp. Marseille-Q0513]
Species Hydra viridissima · all data for this species · gene families

Sequence

CDS

BRAKERKRET00000023933

ATGCGCACAGACACTCCGCCAACCATATATCGCACGAGTTATCAGCCTTACCCCTATGCTATCCCCGAAGTGGAACTAGAGTTCGACCTCGATCCTGCCACCACGGTAGTGCGCAACCGAATGAAAGTGGTGCGGCAAACCTCGGCCGATACCGCCCTCGTCCTGGATGGGGAAGAATTGGAATTAGTATCGGTAACTATAGACGGCCTCGCGTGCAGCCCCGAACGCTACCGTTTAACGACCAACACGCTTGAGCTAACTGGCCTGCCTCCCGAAGCCACTGTCGAAATCGTCAGCCGCTGCCAACCTAGCCGCAATTCCCAGCTCATGGGGCTATACGTATCGGGCGGCAATTTTTTCACCCAATGTGAAGCTCAAGGATTTCGCCGCATTACCTGGTTCGCCGACCGCCCCGATATCATGTCGCGTTACCGTGTCACGTTACGCGCGCCCGCTGCTTATCCCGTTCTGCTTTCTAATGGCAACCTAAGCGCTAGCCGCACTCTGGCCGATCATCGCCTAGAAACCGTATGGGTAGACCCTTTTCCTAAACCTTGCTATCTATTTGCCATGGTGGCAGGTCAATTTACCCATCGCGAGACCCGCGTCACCACTGCGTCTGGGCGCGAAGTGCTGCTCCAAGTCTATAGCGATCCCGGCTCCGAGGACAAAACCGCTTGGGCGCTAGAATCGCTCGTACGGGCGCTGCGCTGGGACGAAAGCCGTTTTGGACTCGAACTCGACTTAGATCGTTTCATGGTGGTGGCAGTACGCGATTTCAACATGGGCGCGATGGAAAACAAAGGCCTGAATATTTTTAACGCCGCCTATGTACTGGCTGACGCTAAAACAGCCACCGATGACGATTACGCCGACATTGAATCGGTAATAGGACACGAGTATTTTCATAATTGGACCGGCAACCGCGTCACCTGCCGCGATTGGTTTCAACTCAGTCTGAAGGAAGGCCTGACGGTCTTTCGCGACCAAGAATTTAGCGCCGATATGATGGCGCAAGGTACAACGACCGTCACCAGCGCACGGGCGGTTAAGCGCATCGACGATGTCGTGACACTGCGGTCGGCGCAGTTTCCCGAAGACGCTGGCCCCATGGCTCACCCTATCCGGCCCGAAAGCTATCAGGAAATTGGCAATTTCTATACGGCCACGGTCTACGAAAAAGGCGCCGAAGTCATCCGCATGCAACATACGCTGCTGGGCGAAGCGAGCTTTCGCGCCGGCATGACGGAGTATTTTCGCCGCCACGACGGCCACGCCGTGACGTGCGACGACTTTGTCGCAGCGATGGAGTCGGTTTACATTAAGCAGCATCCCACGCGCGATTTGTCAATATTTCGCCGCTGGTATGCACAAGCAGGCACTCCACGCGTCAAGGTCGAACTGCACTACGATGCTGCTTGCCGCCGCTGCACCGTCACACTGGCGCAAACATGCCAACCGGTCGGTGTGGAAAAACAGGCGGGTGAGGGCTACGTTAAAGCACCATTTCATATTCCTTTCGCCCTCGGCCTGTTAGACCGACAAGGTCGCGCCATGAGTTTGCGCTATGCGGGCTCGGTGCAAGATACGGTGCTACTCGAATTAACCACCGATCGCCAGCAATGGGTATTTGAAGACATCCCGAGCGCTCCCGTGCCGTCGCTGCTGCGCGATTTTTCGGCGCCCATTATGCTTGATTACGATTGGACGGACGCAGATTTAGCACTGCTTTCTGCGCACGATCCTAACCCCTACGCCCGTTGGGAAGCGGGTCAAGAGCTGGCCACACGACAAATTCTACGCTTGACCACCCTAATCCAAGCAGGGGGGACCTTAACCCTCGAGCCCTCGTTCGTCGATGCTTGGCGCGCCCTACTCACCGACCCTAAGCTCGATGCGGCGTATCGCACGCGCACATTATCCTTACCTACCTTCAAAACGTTGGCCGAGCGCATGGCAGTCGTAGATCCCTTAGCGCTAGCACAAGCCCGCGATGAAGTGCGTAGCCAATTAGGACGCCAGCTCGCCGCTGAATGGCGCCAGGCCTACGATGCTAACCAAACGCCTGGCGCCTACAGCCCTGCTGCCGAACCCGCCGGCAAGCGGGCATTAAAGGGCTTAGCGCTTAATTTCCTCATGGCCGCCAACATCGCTGGCGCTCAAGATCTTGCAGTTGAATTGCACGAGCGGGCCACCAACATGACCGACCGCTTGGCAGGCTTATCGGCCTTAATTAATTATGGCCACGGCGATGCACTCAACACTGCTTTGCAAAATTTCTACGACCAATGGCAACATGACCCATTAGTCATCGATAAATGGTTTGCCCTGCAAGCAACGGCCCGCTCAAGCACTGTAGAGACGATACGCAGGCTGATGGCGCATCCTGCCTTCACATTGCGCAACCCCAACCGTGCCCGGGCGCTGATATTTCAGTTTTGCTTGCATAACGCGCGCGGCTTTCATCACGCTGACGGCGCCGGCTATACCTTATGGGCGGAACAAGTCTTAGCGCTGGATGCCCTAAATCCCGAAATCGCCGCTCGCCTAGCCCGAGCTCTAGAGCACTGGTCGCGTTTCATACCAAAATTGCAGCTTCCCATGCAGGCCGTTCTACGGCAGGCGCAAGCGGTGGGGCCCGAAGTGCGACTGCTGGTCGAAGTGGTGGCGCGGGCCTGCAAAGCCATTAGCCACGCGGTAGGCAAAGGGGCGCTAGGCGGGGCGCTAGGCAGCCTGGAAACCGAAAACGTACAAGGCGAAGTGCAGAAAAAGCTTGATGTCTTGTCGAATGAAATCTTGCTCGAGGCGAATGAGTGGGGCGGCCATCTCGCCGCCATGGCTTCCGAAGAAATGGAGACTATCCATCTCATTCCCAACCGCTATCCGAAGGGAGAATATCTGCTGTTGTTCGATCCTCTCGATGGCTCTTCTAATGTCGACGTTAACGTCTCAATCGGTACTATTTTTTCGGTGCTCCACGCGCCGCACGATGTAGCGGGCGCCAAGGTCagtgaaaatcattttttgcagCCCGGCAATCAACAGGTGGCTGCTGGCTATGCCTTGTACGGGCCGCAAACCATGCTGGTACTGACCGTAGGCAAGGGCGTCGTGGGCTTTACCTTGGACCGCGAAATGGGCTCTTGGCTATTGACGCATGAAAACATGCGCGTTCCCGAAGACACTCAAGAGTTTGCCATTAATATGTCCAACCAACGCCATTGGGCCCCGCCTGTTAAACGCTATATCGAAGAATGCTTGGCGGGTAAGCTCGGACCCTTAGGCAAAAACTACAATATGCGCTGGATCGCCTCGATGGTGGCCGATGTGCATCGCATTATGACCCGCGGCGGTATTTTCATGTACCCCTGGGACGCCCGCGAACCCAATAAGGCGGGCAAATTGCGACTCATGTACGAGGCCAATCCTATGAGCTTTTTAATTGAACAAGCGGGGGGAGTGGCCATTGACGGCTATAGCCGCATCATGGACCTGCAACCGGAAAAGCTCCACCAGCGCGTGAGCGTCATTCTAGGCTCTAAAAACGAAGTAGAACGCGTAGCGCGCTACCATCGCGAAGCGGCGCAAGGCTAG

Transcript

BRAKERKRET00000023933

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P04825	Aminopeptidase N OS=Escherichia coli (strain K12) OX=83333 GN=pepN PE=1 SV=2
Q8H0S9	Puromycin-sensitive aminopeptidase OS=Arabidopsis thaliana OX=3702 GN=MPA1 PE=2 SV=1
B7EA73	Puromycin-sensitive aminopeptidase OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g0562700 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0023079 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17432 all species →	DUF3458_C	Domain of unknown function (DUF3458_C) ARM repeats	Repeat	Interproscan
PF17900 all species →	Peptidase_M1_N	Peptidase M1 N-terminal domain	Domain	Interproscan
PF00316 all species →	FBPase	Fructose-1-6-bisphosphatase, N-terminal domain	Domain	Interproscan
PF11940 all species →	DUF3458	Domain of unknown function (DUF3458) Ig-like fold	Domain	Interproscan
PF18913 all species →	FBPase_C	Fructose-1-6-bisphosphatase, C-terminal domain	Domain	Interproscan
PF01433 all species →	Peptidase_M1	Peptidase family M1 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR024601 all species →	Domain	Peptidase M1, alanyl aminopeptidase, C-terminal	Interproscan
IPR045357 all species →	Domain	Aminopeptidase N-like , N-terminal domain	Interproscan
IPR028343 all species →	Family	Fructose-1,6-bisphosphatase	Interproscan
IPR037144 all species →	Homologous_superfamily	Peptidase M1, alanyl aminopeptidase, C-terminal domain superfamily	Interproscan
IPR012779 all species →	Family	Peptidase M1, alanyl aminopeptidase	Interproscan
IPR033391 all species →	Domain	Fructose-1-6-bisphosphatase class I, N-terminal	Interproscan
IPR000146 all species →	Family	Fructose-1,6-bisphosphatase class 1	Interproscan
IPR035414 all species →	Domain	Peptidase M1, alanyl aminopeptidase, Ig-like fold	Interproscan
IPR038438 all species →	Homologous_superfamily	Alanyl aminopeptidase, Ig-like domain superfamily	Interproscan
IPR044015 all species →	Domain	Fructose-1-6-bisphosphatase class 1, C-terminal	Interproscan
IPR027268 all species →	Homologous_superfamily	Peptidase M4/M1, CTD superfamily	Interproscan
IPR042097 all species →	Homologous_superfamily	Aminopeptidase N-like , N-terminal domain superfamliy	Interproscan
IPR014782 all species →	Domain	Peptidase M1, membrane alanine aminopeptidase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46322 all species →	PUROMYCIN-SENSITIVE AMINOPEPTIDASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0042132 all species →	Molecular Function	fructose 1,6-bisphosphate 1-phosphatase activity	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0005975 all species →	Biological Process	carbohydrate metabolic process	Interproscan
GO:0016791 all species →	Molecular Function	phosphatase activity	Interproscan
GO:0008237 all species →	Molecular Function	metallopeptidase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERKREP00000023933.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of BRAKERKREP00000023933.1 across 29 RNA-seq samples of Hydra viridissima. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

29Samples

0TPM > 0

7Conditions

0.0Max TPM

0.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
whole body	18	0	0.00	0.00
Whole	6	0	0.00	0.00
aposymbioic hydra M9 strain · aposymbioic hydra rep1	1	0	0.00	0.00
aposymbioic hydra M9 strain · aposymbioic hydra rep2	1	0	0.00	0.00
symbioic hydra M9 strain · symbioic hydra rep1	1	0	0.00	0.00
symbioic hydra M9 strain · symbioic hydra rep2	1	0	0.00	0.00
unannotated	1	0	0.00	0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study
SRR21134050	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134051	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134052	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134053	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134054	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134055	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134056	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134057	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134058	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134059	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134060	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134061	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134062	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134063	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134064	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134065	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134066	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134067	whole body	whole body	not recorded	not recorded	SRP392977
SRR10058802	Whole	Whole	not recorded	not recorded	SRP220397
SRR10058803	Whole	Whole	not recorded	not recorded	SRP220397
SRR10058804	Whole	Whole	not recorded	not recorded	SRP220397
SRR10058805	Whole	Whole	not recorded	not recorded	SRP220397
SRR10058806	Whole	Whole	not recorded	not recorded	SRP220397
SRR10058807	Whole	Whole	not recorded	not recorded	SRP220397
DRR048593	aposymbioic hydra M9 strain · aposymbioic hydra rep1	not recorded	not recorded	aposymbioic hydra rep1	DRP003902
DRR048594	aposymbioic hydra M9 strain · aposymbioic hydra rep2	not recorded	not recorded	aposymbioic hydra rep2	DRP003902
DRR048595	symbioic hydra M9 strain · symbioic hydra rep1	not recorded	not recorded	symbioic hydra rep1	DRP003902
DRR048596	symbioic hydra M9 strain · symbioic hydra rep2	not recorded	not recorded	symbioic hydra rep2	DRP003902
ERR13389755	unannotated	not recorded	not recorded	not recorded	ERP162636

Source: CnidoSite RNA-seq expression matrices (HVIRI_TPM, StringTie quantification over 29 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.