Gene detail

Detailed information of BRAKERKREP00000024112.1 in Hydra viridissima

Genomic Location: QPEY01000528.1:187429...188910
NR annotation: XP_047130682.1, GPI transamidase component PIG-S-like [Hydra vulgaris]
Species Hydra viridissima · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q3SZL5	GPI-anchor transamidase component PIGS OS=Bos taurus OX=9913 GN=PIGS PE=2 SV=3
Q5XI31	GPI-anchor transamidase component PIGS OS=Rattus norvegicus OX=10116 GN=Pigs PE=2 SV=3
Q96S52	GPI-anchor transamidase component PIGS OS=Homo sapiens OX=9606 GN=PIGS PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006003 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10510 all species →	PIG-S	Phosphatidylinositol-glycan biosynthesis class S protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019540 all species →	Family	Phosphatidylinositol-glycan biosynthesis class S protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21072 all species →	GPI TRANSAMIDASE COMPONENT PIG-S	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016255 all species →	Biological Process	attachment of GPI anchor to protein	Interproscan
GO:0042765 all species →	Cellular Component	GPI-anchor transamidase complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K05291	PIGS; GPI-anchor transamidase subunit S	-	Glycosylphosphatidylinositol (GPI)-anchor biosynthesis	ko00563	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of BRAKERKREP00000024112.1 across 29 RNA-seq samples of Hydra viridissima. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

29Samples

29TPM > 0

7Conditions

682.8Max TPM

226.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole body	18	18	313.16	682.84
Whole	6	6	52.41	135.01
aposymbioic hydra M9 strain · aposymbioic hydra rep1	1	1	45.94	45.94
aposymbioic hydra M9 strain · aposymbioic hydra rep2	1	1	48.98	48.98
symbioic hydra M9 strain · symbioic hydra rep1	1	1	24.08	24.08
symbioic hydra M9 strain · symbioic hydra rep2	1	1	96.86	96.86
unannotated	1	1	403.82	403.82

Per sample · hover a bar for the full sample record

Show the sample table (29 samples)

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR21134063	whole body	whole body	not recorded	not recorded	SRP392977	682.84
SRR21134062	whole body	whole body	not recorded	not recorded	SRP392977	528.35
SRR21134055	whole body	whole body	not recorded	not recorded	SRP392977	447.44
SRR21134058	whole body	whole body	not recorded	not recorded	SRP392977	387.25
SRR21134066	whole body	whole body	not recorded	not recorded	SRP392977	374.29
SRR21134054	whole body	whole body	not recorded	not recorded	SRP392977	373.03
SRR21134067	whole body	whole body	not recorded	not recorded	SRP392977	370.90
SRR21134057	whole body	whole body	not recorded	not recorded	SRP392977	346.82
SRR21134053	whole body	whole body	not recorded	not recorded	SRP392977	333.57
SRR21134061	whole body	whole body	not recorded	not recorded	SRP392977	332.81
SRR21134065	whole body	whole body	not recorded	not recorded	SRP392977	318.75
SRR21134059	whole body	whole body	not recorded	not recorded	SRP392977	302.25
SRR21134051	whole body	whole body	not recorded	not recorded	SRP392977	253.74
SRR21134052	whole body	whole body	not recorded	not recorded	SRP392977	196.93
SRR21134050	whole body	whole body	not recorded	not recorded	SRP392977	184.17
SRR21134056	whole body	whole body	not recorded	not recorded	SRP392977	78.34
SRR21134064	whole body	whole body	not recorded	not recorded	SRP392977	74.47
SRR21134060	whole body	whole body	not recorded	not recorded	SRP392977	50.93
SRR10058804	Whole	Whole	not recorded	not recorded	SRP220397	135.01
SRR10058802	Whole	Whole	not recorded	not recorded	SRP220397	69.93
SRR10058805	Whole	Whole	not recorded	not recorded	SRP220397	56.56
SRR10058807	Whole	Whole	not recorded	not recorded	SRP220397	25.84
SRR10058803	Whole	Whole	not recorded	not recorded	SRP220397	14.02
SRR10058806	Whole	Whole	not recorded	not recorded	SRP220397	13.07
DRR048593	aposymbioic hydra M9 strain · aposymbioic hydra rep1	not recorded	not recorded	aposymbioic hydra rep1	DRP003902	45.94
DRR048594	aposymbioic hydra M9 strain · aposymbioic hydra rep2	not recorded	not recorded	aposymbioic hydra rep2	DRP003902	48.98
DRR048595	symbioic hydra M9 strain · symbioic hydra rep1	not recorded	not recorded	symbioic hydra rep1	DRP003902	24.08
DRR048596	symbioic hydra M9 strain · symbioic hydra rep2	not recorded	not recorded	symbioic hydra rep2	DRP003902	96.86
ERR13389755	unannotated	not recorded	not recorded	not recorded	ERP162636	403.82

Source: CnidoSite RNA-seq expression matrices (HVIRI_TPM, StringTie quantification over 29 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.