Gene detail

Detailed information of BRAKERKREP00000024207.1 in Hydra viridissima

Genomic Location: QPEY01000531.1:178351...187523
NR annotation: XP_002163934.1, cAMP-dependent protein kinase catalytic subunit alpha isoform X1 [Hydra vulgaris]
Species Hydra viridissima · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P17612	cAMP-dependent protein kinase catalytic subunit alpha OS=Homo sapiens OX=9606 GN=PRKACA PE=1 SV=2
P00517	cAMP-dependent protein kinase catalytic subunit alpha OS=Bos taurus OX=9913 GN=PRKACA PE=1 SV=3
P36887	cAMP-dependent protein kinase catalytic subunit alpha OS=Sus scrofa OX=9823 GN=PRKACA PE=1 SV=4

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001553 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00069 all species →	Pkinase	Protein kinase domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000719 all species →	Domain	Protein kinase domain	Interproscan
IPR000961 all species →	Domain	AGC-kinase, C-terminal	Interproscan
IPR044109 all species →	Family	cAMP-dependent protein kinase catalytic subunit	Interproscan
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR008271 all species →	Active_site	Serine/threonine-protein kinase, active site	Interproscan
IPR017441 all species →	Binding_site	Protein kinase, ATP binding site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24353 all species →	CYCLIC NUCLEOTIDE-DEPENDENT PROTEIN KINASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004672 all species →	Molecular Function	protein kinase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan
GO:0004674 all species →	Molecular Function	protein serine/threonine kinase activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0010737 all species →	Biological Process	protein kinase A signaling	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K04345	PKA; protein kinase A	EC:2.7.11.11	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of BRAKERKREP00000024207.1 across 29 RNA-seq samples of Hydra viridissima. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

29Samples

22TPM > 0

7Conditions

682.1Max TPM

48.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole body	18	12	75.09	682.12
Whole	6	6	0.87	4.65
aposymbioic hydra M9 strain · aposymbioic hydra rep1	1	1	0.06	0.06
aposymbioic hydra M9 strain · aposymbioic hydra rep2	1	1	0.06	0.06
symbioic hydra M9 strain · symbioic hydra rep1	1	1	3.28	3.28
symbioic hydra M9 strain · symbioic hydra rep2	1	1	40.68	40.68
unannotated	1	0	0.00	0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR21134065	whole body	whole body	not recorded	not recorded	SRP392977	682.12
SRR21134059	whole body	whole body	not recorded	not recorded	SRP392977	232.30
SRR21134061	whole body	whole body	not recorded	not recorded	SRP392977	107.22
SRR21134052	whole body	whole body	not recorded	not recorded	SRP392977	87.48
SRR21134064	whole body	whole body	not recorded	not recorded	SRP392977	86.70
SRR21134050	whole body	whole body	not recorded	not recorded	SRP392977	53.86
SRR21134060	whole body	whole body	not recorded	not recorded	SRP392977	38.91
SRR21134053	whole body	whole body	not recorded	not recorded	SRP392977	32.91
SRR21134051	whole body	whole body	not recorded	not recorded	SRP392977	25.31
SRR21134056	whole body	whole body	not recorded	not recorded	SRP392977	4.34
SRR21134055	whole body	whole body	not recorded	not recorded	SRP392977	0.23
SRR21134057	whole body	whole body	not recorded	not recorded	SRP392977	0.21
SRR21134054	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134058	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134062	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134063	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134066	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134067	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR10058802	Whole	Whole	not recorded	not recorded	SRP220397	4.65
SRR10058804	Whole	Whole	not recorded	not recorded	SRP220397	0.40
SRR10058805	Whole	Whole	not recorded	not recorded	SRP220397	0.11
SRR10058803	Whole	Whole	not recorded	not recorded	SRP220397	0.04
SRR10058806	Whole	Whole	not recorded	not recorded	SRP220397	0.02
SRR10058807	Whole	Whole	not recorded	not recorded	SRP220397	0.02
DRR048593	aposymbioic hydra M9 strain · aposymbioic hydra rep1	not recorded	not recorded	aposymbioic hydra rep1	DRP003902	0.06
DRR048594	aposymbioic hydra M9 strain · aposymbioic hydra rep2	not recorded	not recorded	aposymbioic hydra rep2	DRP003902	0.06
DRR048595	symbioic hydra M9 strain · symbioic hydra rep1	not recorded	not recorded	symbioic hydra rep1	DRP003902	3.28
DRR048596	symbioic hydra M9 strain · symbioic hydra rep2	not recorded	not recorded	symbioic hydra rep2	DRP003902	40.68
ERR13389755	unannotated	not recorded	not recorded	not recorded	ERP162636	0.00

Source: CnidoSite RNA-seq expression matrices (HVIRI_TPM, StringTie quantification over 29 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.