Gene detail

Detailed information of BRAKERKREP00000024751.1 in Hydra viridissima

Genomic Location: not available for this species
NR annotation: WP_143176309.1, type I polyketide synthase, partial [Burkholderia ubonensis]
Species abbreviation HVIRI · all data for this species · gene families

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
E0D202	Polyketide synthase GfsA OS=Streptomyces halstedii OX=1944 GN=gfsA PE=1 SV=2
E0D203	Polyketide synthase GfsB OS=Streptomyces halstedii OX=1944 GN=gfsB PE=1 SV=1
I6XD69	Mycoketide-CoA synthase OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) OX=83332 GN=pks12 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000656 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00550 all species →	PP-binding	Phosphopantetheine attachment site	Domain	Interproscan
PF08659 all species →	KR	KR domain	Family	Interproscan
PF00109 all species →	ketoacyl-synt	Beta-ketoacyl synthase, N-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009081 all species →	Domain	Phosphopantetheine binding ACP domain	Interproscan
IPR036291 all species →	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan
IPR016039 all species →	Homologous_superfamily	Thiolase-like	Interproscan
IPR036736 all species →	Homologous_superfamily	ACP-like superfamily	Interproscan
IPR020806 all species →	Domain	Polyketide synthase, phosphopantetheine-binding domain	Interproscan
IPR013968 all species →	Domain	Polyketide synthase, ketoreductase domain	Interproscan
IPR006162 all species →	PTM	Phosphopantetheine attachment site	Interproscan
IPR050091 all species →	Family	Polyketide and Nonribosomal Peptide Biosynthesis Enzymes	Interproscan
IPR014030 all species →	Domain	Beta-ketoacyl synthase, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43775 all species →	FATTY ACID SYNTHASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016746 all species →	Molecular Function	acyltransferase activity	Interproscan
GO:0031177 all species →	Molecular Function	phosphopantetheine binding	Interproscan
GO:0004312 all species →	Molecular Function	fatty acid synthase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0006633 all species →	Biological Process	fatty acid biosynthetic process	Interproscan
GO:0071770 all species →	Biological Process	DIM/DIP cell wall layer assembly	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERKREP00000024751.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.