Gene detail

Detailed information of BRAKERKREP00000024845.1 in Hydra viridissima

Genomic Location: not available for this species
NR annotation: WP_059784731.1, type I polyketide synthase [Burkholderia ubonensis]
Species abbreviation HVIRI · all data for this species · gene families

Sequence

CDS

BRAKERKRET00000024845

ATGCTAGTGGTGCGTCACGGCGAGGCGCCGCCGCAGCACGGCTTCGACACGCTCAACCCCGCGATCGGCTGGGACGCGGCGAAATTCGCGGTGGCGCGGCGGCCGACGCCGCTGCCGCCCACCAACGGGCGGCCCTGGCAGGCCGGCGTCAGCAGCTTCGGCTTCAGCGGTACCAACGCGCATGCAATCGTCGCGGCGCCGCCGCCGTTAGCGCAAGCACCGAACGACGCGCACGCGAACGCCTTCGGCACTCACGTGCTCGCGCTCAGCGCGAAGACGCCCGATGCGCTGCGCCGGCACGTCGACGAGGTGGCTGCGTACCTGCGCGCGAAACCCGCTGCCGAACTGGCCGCGATCGCGTATACCTCGACGCACCGGCGCGTCGCGCTCGGCGAGCGGATCGCCGTGACGGGGCGCGACGGCGCCGAACTGGCCGCGCGGCTGGAACGCGCGTTGGCCGAACGCGAACCGCGCCGCGCGTCGGGCCCGGCCCGTATCGTGCTGTTCTTGTCGGGCGCTGCTGGCGACGATGCGGCCGACGATATGTCGCTGGCTGCCACGCATCGCGCGTGGCTCGCGCGATGCACGTCGTTCGGCCTATTCCCCGAAGCGATGGTGGTGCACGCCATCGAGCCCACGTTCGTGCATGCGTGGCTCTGGCATCGCGACGAACCGGCCGGCTTGCCGTACCGGACCGGCGCGGCAGGAAACGAACTGCATACGATCGCCGCGAACGAGACCGTCGCCGGTGAAACGCGCGCTGGTAGTCCGGCCGACGCATTCGAAGGCGCACACGTGCTCGCGCTCGGCGCGCCGCCGTGCCGGTTGCCGGCCTCGGCGTGCTGGCACCGCATCGACGACGATACGGCGCTGCGCGCGACGCTGGCCGCGCTGTTCACGGCGGGTGTTGAGGTCGACTGGACGCCGCTCGATGCGCGGCGCCATACCGTCGTCACTGATTTCCCGCGCCGGCCGTTCGCGCGCCGCACGTTCCGCTCGCCGCGCATCGACGCGGCGCTTGCCGCGGGCGACGCGCCGTGCGAAGGCGCGATCCATCCGCTCGTGCGCGACCGGCTCGCACATCCCGACGGCCGCGTGAGCTGCCGCCTGCGTACCGCGACCGCGTGGCTCGATTTCATCGACGGGCACCGTGTGCAGGGCCGGCGCCTGCTGCCCGCATCGCTATTGCTCGAACTGCTGCGCACGGTCGCGGCCGATGCGCGCGGCGCGGCCGTCACGCTGGCGGACGCGCAGTTCCAGCGGCCCGTCGATCTCGATGCGGCCGCCAGCGACTATCTGGTGCAGGTCGACGCGCCGGCCGAGGGCGCACGCGTGTCGCTGTGGAGCCGGGCGGCTGACGACGCGGCGCCGCCGTGGGTCCGGCACGCGAGCGCCGCCTGCGCGCTCGCCAGCGAGGAGGTGGTGGTGGACGCGGTTGAGGATAGCGACTGGCCCGCCGCTGGCTGGCGTGTGCTCGACGTCGCCGCGCTTTACGCGCATCACGAGGCCGGCGATGTGTTGCTCGGCGAGGATTTCCGCTGTATCCGCGTGTTGCGCGTGCAGGGCGAGCGCTGCGAGGTCGAGGTTGGCCCGGTGCGTGCCGTCGACTACGACGCGCCGCAGCGCGCCGCGCTGCTAATCGACGCCTGCCTGCAGGCCAGCGCCGCCGCGCGTGACGCGGACGACGGCCTGTTCCTGCTCGCCGGTGTCGGCGAGGTCGCGTTGCCGCCCGCTGCGGCGCTACCCGACCGCTTGCGGGTGCGGCTTGTGCGTGACGCTTGCGACGATGGTTACCGCTTTACGATCACGTTGGCAGATGCCGGCGGTCGACCGTTCGGGCGGCTGCGCGACGTGCTGTTCCGGCGTGTGCAGGTGGCGCCGCGGGTCGCGCCGGTCTACGAGACCGGCTGGGAAGCCGTCGACTGGCCACCGCGCGCCGCCGCGATCGTGCGCGCCGCGCTGCCGGCGCCCGACGCGCTGGACGGCCTCGAACCGTCCGCCACCTGGGCCGCGCGCTTCGAGCTCGACGCCTACGATGCCTATCGCCAGCAGATCGAAGAGGCCTGCGCTGGCATCGTCGCCGATACGCTGGCCGCGCTCGGGCACGCTGGCTCCGGGGCCGACGCCGACACGATCGCGCTAGACCAGCAACGGCTGTTCGCGCATCTGCTCGCGGTGCACGCGCGCGGCGCCCGCGCGGCGCCCGCGCCGACGGATGCGGCCGGCGCGCGGCTCGCTGCGGTCGATACCGCGTTCCCGCAGTTTCGCGGCGAGACTGAGTTCCTGCGCCGCTGCGCCGACGCGTTGCCCGACGTGCTGCGCGGCCGGCGTGATCCGCTCGAGGTACTGTTCGGGGGGTCCGCGTTCGACGGCAGCGAGGCGGTGTACGTCGAGTCGCCGATCGCGCGCGTGCTGAACGGCCAGCTCGCGCAGTGGGCCGCGCGGCTCGCCGCGCACCGGCCGCTGCGGATCATCGAGATCGGCGCTGGCACAGGCGGCACCTCGCGCACCGTGCTCGACGCGTTGCACGAACTACCGGTGGAGATCTACTGCTATACAGACGTCTCGCCGCTGTTCCTCGAACGCGCGCGATCGCGGTTCAGCGCCGCGGGCTTCATCGACTACCGCCTGCTCGACATCGAGCGGCCGATCGCAGACCAAGGGTTCGCGATCGGCTCGTTCGACCTCGTGATTGCCGCTAACGTGCTGCATGCGACGCGCTCGATCGCCGACACGCTACGTCAAGTTCGCGACCTGCTCGCGCCGGGCGGCTACCTGCTGCTGCGCGAATGCACGGCGCCGCGGCTCAGCGCCGACCTGAGCTTTGGCATGACCGACGGCTGGTGGCGCTTCGAGGATCACGCGCTGCGCGCCGGCTACGCGCTGCTGTCCGTCGAGCAATGGCAGCGGCAGCTGGCCAAAGCCGGTTTCGAAATCACGCGTGGCCTGCCGCCCAGCGACGCGAGCGCGGAAGCGCTGATCGTCGCGCAAGCGTCAGCCGCCGATCGCGCCGAACGCTGGCTAGTAGTCCATGATGGGCAGGGAGCCGGCTGCGTCGCGCAGCTCGCGCGCGAGCAAGCGTCGTACTGCGAACTGTCGTGGGCCGACGCGATCGTGGGCGACGCCGATCCGGCGCGCGGCGCGTTCGACCGAATCGTCTGCTTCGCAGATGCCGGCGAGCGCGAGAACGCCGATCCGGTCGCGGCAGCCACCACGCAGTACGAGGCGAGTATCGCGCTGTGCCGGCGCTGGCTCAACGTCGACGGCGCGCCCGGCGCGCGGCTCTGGTGCGTGACGCGCCAGGCGGAGCGCGCTGTCGACGCTGACCGCTTGGATGGGCTCGCGCAGTCGGTGGCGGCCGGCGTGCTCAAGTGCGCGGCGCTCGAATTCCCCGGCCGCATCGCGGGCGTGGTCGATCTAGCGGCCGAGCCGGTTGATTTCGCGCCACTGCTCGCACATTTCCGCGATCCGGGCGCACTACGCTACGTCGCGGTGCGCGGCGGCCGGCCCCATGTGCCGCGCCTGCGGCCGGCTAATACCGGTGCGGCGCCCGCAGCCGTACCATTCGACGGTACGGTACTGATCACCGGCGGGTTCGGCGGGATCGGGTATGCGCTCGCCGAGGCGCTGGCCGCGCGCGTCGTAACGCTGGTGCTGGTCGGGCGTCGCACCGGCGGGCCCGACCGCGCTGCGCGCGTCGCGGCATTGCGCGCGCGCGGCGCGCGCGTGATCGCGCTGGCCGCCGATCTTGCCGATGCGGAGCAGGTCGCGGCGCTGTTCGCGCGGCTCGCCGACGACGGTATCGCGGTCGCGCACATAATCCACGCGGCCGGCGTCGGCGGCAGCCGGCTGCTTGGCGACAGCGCGCGCGGCGACTTGCGCGAGGTGGTCGACGCGAAGCTAGCCGGCACCTGGCACCTGCACGCGCATGCCGGCTCGGGCCTGAAATCGTTTACGGTGCTCTCGACCATGCTTGCGCTGTGGGGTGCGCGCGAGAAGGCGCACTATACGCTTGCTAATCACTTCGCGGAACGCGTCGTCGCGTGGCGCCGCGCGCGCGGCTTGGCCGCCTCGGTCGTGCACCTGGGCCCCGTCGACGGCGGCATGCTCGATGCAGCCGGCAAGGCCGCTGCGGCGCGCGGCGGCGTGCGCAGCTTCACGCTGCGCGAGGTGGCCGGCTGGCTCGCCGGGCCGCTGCCGTACGCCGACGCTGCGCTGCTCGACATCGACTGGGCGCGCTTCAAGCCGATCTACCGCTACGGCTGGCTCGGCGCGCTGTTCGCCGAAGTGGGCGCGAGCGCCGACGCCGACACCGACGGCGCCGACACGTTCCGGCGCGCGTACGCGGCAGCCGGTTATCGCGAGTCGATGCTCGAAGACTTGCTGCATGCGCTGCTGCGCGACGTGCTGGGCCTGTCGGGCAGCTTCGCGGCGTATGCCGGCACCGGCTTCCACGATCTTGGCATGGATTCGTTGCTCACGCTGTCGTTCGCCGAGAAGCTCAGCGCTCGCGCCGGGCATGCAGAAGATCCAGGCGCTATCGGCGCGACTCGACCAGCCGGTCGCAATCGTCGGCATCGGCTGCCGGTTGCCCGGCGCCGATTCCCCCGAGGAGCTGTGGGCACTGCTGCGCGACGGCCGCGAGGCGCTCTCCGAGGTGCCGGCCGAGCGTTGGAATCTGGACGCCCATTACGACGCGACACCAGGCACACCCTACAAGACCTACGCGCGCCGCGCCGGCTACCTCACCGGGATCGACCATTTCGACGCGCGCTTCTTCGGCATCTCGCCGCGCGAGGCGCAACGCATGGACCCGCAGCAGCGGCTGCTGCTCGAGGTCAGCCACCAGGCGCTCGAAGATGCCGAACTACCGGTCACGGCGCTGCGCGACCAGCCGGTGGGTGTGTTCGTCGGCATCAGTTCGAGCGAATACGCGGTGATGACGTTCAGCAAGGAACGCACCGACAGTCAGGATGCCTACTCGATTACCGGCACGTCGATGAACTCAGCCGCGGGCCGGCTCGCTTATCACTACGGCTTCACCGGCCCGGCACTGGCGATCGACACGGCCTGCTCGTCATCGCTGGTCACGATCCACCAGGCGTGTCGCAGCCTCATCAACGACGAATGCCATACCGCGCTGGCGGGCGGCGTGAACTGCCTGCTAACGCCCGAACCGTCGATCGCGCTCGCGCAGAACAAGGTGCTGAGCGCGAGCGGGCGTTGCAGCCCGTTCAGCGCCGAGGCCGACGGACTGGTGCGCGGCGAGGGCTGCGGGATGCTGGTGCTGGGTGTTGGCCGCGACGCCGACGCGCCAGTGCTGATCGGCGCGCTGAAGGCGCACATCGGCCACCTCGAGGCGGCGAGCGGCGTGGCCGGCGTGATCAAGACCGTTCTCGCATTCCGCCACCGACTGTTGCCCGCGCAGATCAACCTGGGCGCGCCGACGCCGCACGCGCTGGACGTGCCGGCCGACGTCGGCCCCGCTGCGGCGCCCGCCGAACCCGCGCTGGCCTGGCTGTTCACGGGCCAGGGCTCCCAGTACGCGAAGATGGGCCGCGCACTGTACGACACGCAGCCGGCCTTTCGCGCCTGCCTCGAAGCCGCCGAGCGCGCGCTCGCGCCGCATCTCGGCGAATCGGTGCTGTCGGTGATCTGGGGCGAGGCCGGCGCGCTCGACAGCACGCGCTACACCCAGCCGGCGATCTTCGCGCTGCAGTACGCGCTCTCACACTATCTCGCGGGGCTTGGCCTCACACCGCACTACGTGCTGGGCCACAGCATCGGCGAGTACGCGGCGGCGGTGCTGGCCGGTGTGTTCGGCCTCGACGATGCCGCGCATATGATCGTCCAGCGCGGTCGGTTGATGGAGGAACGCTGCGCGCCGGGCGGCATGCTCGTGCTGCTGACCGACGCGGCCCGCGCGGCGGCGCTCGCGTGCACGGCGGACGGCGCCACGCTGGCGGTGGCGAACGGCCCGACGAGCCTCGTCTACGCCGGCCCGGCCGAGGCGATCGAACGCCTCGCGAACGCCTCGCGCGCGGCCGAGGTGCGCTGCGTGCCGCTCGCGGTCTCGCATGCGTTCCATTCGCCGATGATGGAGCCGATGCTCGCCGAGTTTGCCGAAGTCGTTCGGCAGACGCGCTTCTCGCCGCCGAGCATCCCATTCGTCTCGACGGTGCTGGGCCGGCTCGCGGCCGGCGAGATCACCGATCCGAACTACTGGGTCGCGCACGTGCGCGACGCCGTGCGCTTCGACGCAGCGGTGGCCGCGTTGTGGGCCGACGAGGGCTGGCGCGCGGCGCCGGCGCGGTTGGCAATCGAGATCGGGCCGAACGAGCAGCTGATCGGCATGGCGCGGCAGATGGCCGGCGCCGACGGCGCGCAGTGGCACGGCTTGCTGCGCCCGTGCGACGACCTGACTTCGTTCGCACAGACGATGCGTGCTGTCTACCTGGCGGGTTTGCCGCTGCGCTGGCCGCGCAGTTCAGCGCGCGATGCGGTGCGGCCAGCGTTGCCCGGTTATCCGTTCCAGCGCCAGCGCTACTGGCTGCCCGACGGCGCGCCGCGTGCGGCGTGCAAAGCTGCCGGCACGGGGATCGCTGCAGTCGACGGCGCGGCCAATGA

Transcript

BRAKERKRET00000024845

Protein

BRAKERKREP00000024845.1

MLVVRHGEAPPQHGFDTLNPAIGWDAAKFAVARRPTPLPPTNGRPWQAGVSSFGFSGTNAHAIVAAPPPLAQAPNDAHANAFGTHVLALSAKTPDALRRHVDEVAAYLRAKPAAELAAIAYTSTHRRVALGERIAVTGRDGAELAARLERALAEREPRRASGPARIVLFLSGAAGDDAADDMSLAATHRAWLARCTSFGLFPEAMVVHAIEPTFVHAWLWHRDEPAGLPYRTGAAGNELHTIAANETVAGETRAGSPADAFEGAHVLALGAPPCRLPASACWHRIDDDTALRATLAALFTAGVEVDWTPLDARRHTVVTDFPRRPFARRTFRSPRIDAALAAGDAPCEGAIHPLVRDRLAHPDGRVSCRLRTATAWLDFIDGHRVQGRRLLPASLLLELLRTVAADARGAAVTLADAQFQRPVDLDAAASDYLVQVDAPAEGARVSLWSRAADDAAPPWVRHASAACALASEEVVVDAVEDSDWPAAGWRVLDVAALYAHHEAGDVLLGEDFRCIRVLRVQGERCEVEVGPVRAVDYDAPQRAALLIDACLQASAAARDADDGLFLLAGVGEVALPPAAALPDRLRVRLVRDACDDGYRFTITLADAGGRPFGRLRDVLFRRVQVAPRVAPVYETGWEAVDWPPRAAAIVRAALPAPDALDGLEPSATWAARFELDAYDAYRQQIEEACAGIVADTLAALGHAGSGADADTIALDQQRLFAHLLAVHARGARAAPAPTDAAGARLAAVDTAFPQFRGETEFLRRCADALPDVLRGRRDPLEVLFGGSAFDGSEAVYVESPIARVLNGQLAQWAARLAAHRPLRIIEIGAGTGGTSRTVLDALHELPVEIYCYTDVSPLFLERARSRFSAAGFIDYRLLDIERPIADQGFAIGSFDLVIAANVLHATRSIADTLRQVRDLLAPGGYLLLRECTAPRLSADLSFGMTDGWWRFEDHALRAGYALLSVEQWQRQLAKAGFEITRGLPPSDASAEALIVAQASAADRAERWLVVHDGQGAGCVAQLAREQASYCELSWADAIVGDADPARGAFDRIVCFADAGERENADPVAAATTQYEASIALCRRWLNVDGAPGARLWCVTRQAERAVDADRLDGLAQSVAAGVLKCAALEFPGRIAGVVDLAAEPVDFAPLLAHFRDPGALRYVAVRGGRPHVPRLRPANTGAAPAAVPFDGTVLITGGFGGIGYALAEALAARVVTLVLVGRRTGGPDRAARVAALRARGARVIALAADLADAEQVAALFARLADDGIAVAHIIHAAGVGGSRLLGDSARGDLREVVDAKLAGTWHLHAHAGSGLKSFTVLSTMLALWGAREKAHYTLANHFAERVVAWRRARGLAASVVHLGPVDGGMLDAAGKAAAARGGVRSFTLREVAGWLAGPLPYADAALLDIDWARFKPIYRYGWLGALFAEVGASADADTDGADTFRRAYAAAGYRESMLEDLLHALLRDVLGLSGSFAAYAGTGFHDLGMDSLLTLSFAEKLSARAGHAEDPGAIGATRPAGRNRRHRLPVARRRFPRGAVGTAARRPRGALRGAGRALESGRPLRRDTRHTLQDLRAPRRLPHRDRPFRRALLRHLAARGATHGPAAAAAARGQPPGARRCRTTGHGAARPAGGCVRRHQFERIRGDDVQQGTHRQSGCLLDYRHVDELSRGPARLSLRLHRPGTGDRHGLLVIAGHDPPGVSQPHQRRMPYRAGGRRELPANARTVDRARAEQGAERERALQPVQRRGRRTGARRGLRDAGAGCWPRRRRASADRRAEGAHRPPRGGERRGRRDQDRSRIPPPTVARADQPGRADAARAGRAGRRRPRCGARRTRAGLAVHGPGLPVREDGPRTVRHAAGLSRLPRSRRARARAASRRIGAVGDLGRGRRARQHALHPAGDLRAAVRALTLSRGAWPHTALRAGPQHRRVRGGGAGRCVRPRRCRAYDRPARSVDGGTLRAGRHARAADRRGPRGGARVHGGRRHAGGGERPDEPRLRRPGRGDRTPRERLARGRGALRAARGLACVPFADDGADARRVCRSRSADALLAAEHPIRLDGAGPARGRRDHRSELLGRARARRRALRRSGGRVVGRRGLARGAGAVGNRDRAERAADRHGAADGRRRRRAVARLAAPVRRPDFVRTDDACCLPGGFAAALAAQFSARCGAASVARLSVPAPALLAARRRAACGVQSCRHGDRCSRRRGQ

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A0A1V6PAA5	Methyltransferase calH OS=Penicillium decumbens OX=69771 GN=calH PE=1 SV=1
P40872	Polyketide synthase PksM OS=Bacillus subtilis (strain 168) OX=224308 GN=pksM PE=1 SV=4
Q2T4N1	Polyketide synthase ThaG OS=Burkholderia thailandensis (strain ATCC 700388 / DSM 13276 / CCUG 48851 / CIP 106301 / E264) OX=271848 GN=thaG PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0060944 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21089 all species →	PKS_DH_N	Polyketide synthase dehydratase domain	Domain	Interproscan
PF08242 all species →	Methyltransf_12	Methyltransferase domain	Domain	Interproscan
PF08659 all species →	KR	KR domain	Family	Interproscan
PF16197 all species →	KAsynt_C_assoc	Ketoacyl-synthetase C-terminal extension	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029063 all species →	Homologous_superfamily	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Interproscan
IPR049552 all species →	Domain	Polyketide synthase, dehydratase domain, N-terminal	Interproscan
IPR042104 all species →	Homologous_superfamily	Polyketide synthase, dehydratase domain superfamily	Interproscan
IPR013217 all species →	Domain	Methyltransferase type 12	Interproscan
IPR020807 all species →	Domain	Polyketide synthase, dehydratase domain	Interproscan
IPR036291 all species →	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan
IPR016039 all species →	Homologous_superfamily	Thiolase-like	Interproscan
IPR013968 all species →	Domain	Polyketide synthase, ketoreductase domain	Interproscan
IPR032821 all species →	Domain	Polyketide synthase, C-terminal extension	Interproscan
IPR050091 all species →	Family	Polyketide and Nonribosomal Peptide Biosynthesis Enzymes	Interproscan
IPR049900 all species →	Domain	Polyketide/metazoan fatty acid synthase, dehydratase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43775 all species →	FATTY ACID SYNTHASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016746 all species →	Molecular Function	acyltransferase activity	Interproscan
GO:0004312 all species →	Molecular Function	fatty acid synthase activity	Interproscan
GO:0006633 all species →	Biological Process	fatty acid biosynthetic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERKREP00000024845.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.