Gene detail

Detailed information of BRAKERKREP00000025029.1 in Hydra viridissima

Genomic Location: not available for this species
NR annotation: XP_047128747.1, prolyl-tRNA synthetase associated domain-containing protein 1-like [Hydra vulgaris]
Species Hydra viridissima · all data for this species · gene families

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9D820	Prolyl-tRNA synthetase associated domain-containing protein 1 OS=Mus musculus OX=10090 GN=Prorsd1 PE=1 SV=1
Q6PFS2	Prolyl-tRNA synthetase associated domain-containing protein 1 OS=Danio rerio OX=7955 GN=Prorsd1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009725 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04073 all species →	tRNA_edit	Aminoacyl-tRNA editing domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007214 all species →	Domain	YbaK/aminoacyl-tRNA synthetase-associated domain	Interproscan
IPR036754 all species →	Homologous_superfamily	YbaK/aminoacyl-tRNA synthetase-associated domain superfamily	Interproscan
IPR040285 all species →	Family	Prolyl-tRNA editing protein ProX/PRXD1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR31423 all species →	YBAK DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0002161 all species →	Molecular Function	aminoacyl-tRNA editing activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K19055	prdX, proX; Ala-tRNA(Pro) deacylase	EC:3.1.1.-	Transfer RNA biogenesis	ko03016	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of BRAKERKREP00000025029.1 across 29 RNA-seq samples of Hydra viridissima. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

29Samples

24TPM > 0

7Conditions

254.4Max TPM

84.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole body	18	14	80.39	254.40
Whole	6	6	101.49	123.10
aposymbioic hydra M9 strain · aposymbioic hydra rep1	1	1	126.32	126.32
aposymbioic hydra M9 strain · aposymbioic hydra rep2	1	1	128.67	128.67
symbioic hydra M9 strain · symbioic hydra rep1	1	1	68.06	68.06
symbioic hydra M9 strain · symbioic hydra rep2	1	1	81.46	81.46
unannotated	1	0	0.00	0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR21134051	whole body	whole body	not recorded	not recorded	SRP392977	254.40
SRR21134052	whole body	whole body	not recorded	not recorded	SRP392977	224.98
SRR21134050	whole body	whole body	not recorded	not recorded	SRP392977	204.36
SRR21134059	whole body	whole body	not recorded	not recorded	SRP392977	171.59
SRR21134053	whole body	whole body	not recorded	not recorded	SRP392977	139.84
SRR21134061	whole body	whole body	not recorded	not recorded	SRP392977	126.06
SRR21134060	whole body	whole body	not recorded	not recorded	SRP392977	96.60
SRR21134064	whole body	whole body	not recorded	not recorded	SRP392977	71.79
SRR21134066	whole body	whole body	not recorded	not recorded	SRP392977	47.24
SRR21134056	whole body	whole body	not recorded	not recorded	SRP392977	43.08
SRR21134057	whole body	whole body	not recorded	not recorded	SRP392977	29.54
SRR21134054	whole body	whole body	not recorded	not recorded	SRP392977	23.90
SRR21134055	whole body	whole body	not recorded	not recorded	SRP392977	12.33
SRR21134065	whole body	whole body	not recorded	not recorded	SRP392977	1.34
SRR21134058	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134062	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134063	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134067	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR10058804	Whole	Whole	not recorded	not recorded	SRP220397	123.10
SRR10058807	Whole	Whole	not recorded	not recorded	SRP220397	111.46
SRR10058805	Whole	Whole	not recorded	not recorded	SRP220397	109.80
SRR10058803	Whole	Whole	not recorded	not recorded	SRP220397	108.93
SRR10058806	Whole	Whole	not recorded	not recorded	SRP220397	92.28
SRR10058802	Whole	Whole	not recorded	not recorded	SRP220397	63.34
DRR048593	aposymbioic hydra M9 strain · aposymbioic hydra rep1	not recorded	not recorded	aposymbioic hydra rep1	DRP003902	126.32
DRR048594	aposymbioic hydra M9 strain · aposymbioic hydra rep2	not recorded	not recorded	aposymbioic hydra rep2	DRP003902	128.67
DRR048595	symbioic hydra M9 strain · symbioic hydra rep1	not recorded	not recorded	symbioic hydra rep1	DRP003902	68.06
DRR048596	symbioic hydra M9 strain · symbioic hydra rep2	not recorded	not recorded	symbioic hydra rep2	DRP003902	81.46
ERR13389755	unannotated	not recorded	not recorded	not recorded	ERP162636	0.00

Source: CnidoSite RNA-seq expression matrices (HVIRI_TPM, StringTie quantification over 29 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.