Gene detail

Detailed information of BRAKERKREP00000025090.1 in Hydra viridissima

Genomic Location: not available for this species
NR annotation: XP_047125818.1, GMP synthase [glutamine-hydrolyzing] [Hydra vulgaris]
Species Hydra viridissima · all data for this species · gene families

Sequence

CDS

BRAKERKRET00000025090

atgaaCAATGACGTTGAAATGTTAGGTGATAATACTGAGAAGGTTGCTATCTTAGATGCTGGAGCCCAATACGGGAAAGTTATTGATCGGCGTGTTCGAGAATTATCCATTCTTTCAGTTATCCTTCCACTTAATACAAGTCCAgcacagttaaaaaaacttaatgtcaaagctGTGATTATTTCTGGTGGTCCAGGAAGTGTGTTTGATGAAAACGCTCCCAATTGGGATGCTTCAATATTACACTCAGGCATACCAATTCTAGGAATATGCTATGGAATGCAGttgatAAACAGAGATACTGGTGGCAAAGTTACATCTGGTCAAATTAGGGAAGACGGACAGTTTCCTGTTAAGATTGGAAAATCTCTTTTATATGAaGGACTTGCagaagaagaatattttttacttacgCACAAAGATATATGTGTAGAGTTGTCTCCAGAATATCGCCAAAATGCTTCTCATGGAAATATATGTGTTGgtcTTGAAAATGAAGCCAAGAAGATTTATGGTGTGCAATATCATCCTGAAGTTGATTTATCGACAAATGGAAAAACTGTgattaaaaacttcttaataaaaaTTGCAGGTTGTGAGCAAAACTTTACTCTACAATGTCGTCAAAGCACTTGTATAAGTGAGATCATGGATATTGTGGGGGGAAAAGATAAAGTcttgTCTTTGGTCAGTGGTGGCGTAGATTCTACTGTGTGTActattcttttacaaaaagctATTGGTATTGACAGGGTAGTTGCTGTGCACATTGATAATGGCTTCTTAcgtaaaaatgaaagtgaaaaagTAAAGGAACTGTATGAACATTATGGTCTAAAGCTTCATGTGTACAATCAAAAGCATCACTTTTTACATGCTTCCACAAGGATACCAAAAAAGACAGAAAGTGGCACAGTGAATATTCAAGTCGGACCATTACATAGTGTGACTGATCCTGAAGAGAAGCGAAAAATCATAGGCGATACCTTTATGGAAgTTTGTGAAAGAATATTAAAGGATTTGAGACTGGACCCTGAAACTACATTACTAGCGCaaggaACTTTGAGACCAGATTTAATTGAAAGTGCATCACATTTAGCAAGCAGTAATGCTTGTACAATAAAAACTCATCATAATGACTCAACTTTAGTCAGACAACTGAGAGAGAAAGGACGTATTGTTGAACCATTGAAAGATTTCCATAAGGATGAAGTGCGTACTCTGGGTAGGCAACTTGGTGTGCCTAATATTCTGATTGATCGACATCCGTTTCCGGGTCCTGGTCTTGCTATTAGAATATTGTGCGCTGAAGAAAAGTTTATGTGCAAGGATTTTTCAGAGATCagcaatattttgaattttgctgTGAACTTTTcaaatgctttgaaaaaaCCTCATCCCTTGTTAAACCGAATTCAAAATGGTTTACCATATGCTGATATTGAAATGTTGAAAGAAGTCAGCTCTCGTTGTTCATTTTCTTCTACTTTACTGCCAATAAAAACAGTTGGTGTGCAAGGGGATCTGAGAACTTATAGCTATGTTGCAGCTTTGTCATCAGACGATGAATACCCATGCTGGGAATCATTAATGAAGCTTGCAAAGGTTATTCCAAGAATATGTGCAGTTAATAGagttgTCTATGTATTTGGAGGGAAGATCAAGTATCCGGTAAGCGAAATAACATATACTACATTAACAGAAACTGTTCTGGCAACACTTCGGGAGGTGGACCATCTGGctaatgaaacaatttttgagaatgGTTTAGTTGAGACTATAACTCAGATGCCTATAATCCTCATTCCTGTTCATTTTGACGTTGATCCGGTATCACGCAATCCGGTATGTCAACGGTCTGTTGTGATTCGACCATTTATCACCAATGACTTTATGACTGGTTTTGCTGCACAGCCAGGAAAAGATATTCCTTTTAAGGTCATACAAGATATAGTTCGCAAAATAAATACTGTACCAGGAATTTCAAGAGTACTCTACGATTTAACGTCAAAACCTCCTGGAACTACTGAATGGGaatga

Transcript

BRAKERKRET00000025090

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q4V7C6	GMP synthase [glutamine-hydrolyzing] OS=Rattus norvegicus OX=10116 GN=Gmps PE=1 SV=1
Q3THK7	GMP synthase [glutamine-hydrolyzing] OS=Mus musculus OX=10090 GN=Gmps PE=1 SV=2
Q5RA96	GMP synthase [glutamine-hydrolyzing] OS=Pongo abelii OX=9601 GN=GMPS PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003265 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00958 all species →	GMP_synt_C	GMP synthase C terminal domain	Domain	Interproscan
PF02540 all species →	NAD_synthase	NAD synthase	Domain	Interproscan
PF00117 all species →	GATase	Glutamine amidotransferase class-I	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001674 all species →	Domain	GMP synthase, C-terminal	Interproscan
IPR029062 all species →	Homologous_superfamily	Class I glutamine amidotransferase-like	Interproscan
IPR025777 all species →	Domain	GMP synthetase ATP pyrophosphatase domain	Interproscan
IPR004739 all species →	Domain	GMP synthase, glutamine amidotransferase	Interproscan
IPR022310 all species →	Domain	NAD/GMP synthase	Interproscan
IPR017926 all species →	Domain	Glutamine amidotransferase	Interproscan
IPR014729 all species →	Homologous_superfamily	Rossmann-like alpha/beta/alpha sandwich fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11922 all species →	GMP SYNTHASE-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003922 all species →	Molecular Function	GMP synthase (glutamine-hydrolyzing) activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006164 all species →	Biological Process	purine nucleotide biosynthetic process	Interproscan
GO:0006177 all species →	Biological Process	GMP biosynthetic process	Interproscan
GO:0003921 all species →	Molecular Function	GMP synthase activity	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01951	guaA, GMPS; GMP synthase (glutamine-hydrolysing)	EC:6.3.5.2	Peptidases and inhibitors	ko01002	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of BRAKERKREP00000025090.1 across 29 RNA-seq samples of Hydra viridissima. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

29Samples

9TPM > 0

7Conditions

22.8Max TPM

3.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole body	18	0	0.00	0.00
Whole	6	6	15.55	22.82
aposymbioic hydra M9 strain · aposymbioic hydra rep1	1	1	4.59	4.59
aposymbioic hydra M9 strain · aposymbioic hydra rep2	1	1	4.29	4.29
symbioic hydra M9 strain · symbioic hydra rep1	1	1	0.72	0.72
symbioic hydra M9 strain · symbioic hydra rep2	1	0	0.00	0.00
unannotated	1	0	0.00	0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR21134050	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134051	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134052	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134053	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134054	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134055	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134056	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134057	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134058	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134059	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134060	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134061	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134062	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134063	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134064	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134065	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134066	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134067	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR10058802	Whole	Whole	not recorded	not recorded	SRP220397	22.82
SRR10058804	Whole	Whole	not recorded	not recorded	SRP220397	16.73
SRR10058807	Whole	Whole	not recorded	not recorded	SRP220397	14.39
SRR10058805	Whole	Whole	not recorded	not recorded	SRP220397	13.92
SRR10058803	Whole	Whole	not recorded	not recorded	SRP220397	12.96
SRR10058806	Whole	Whole	not recorded	not recorded	SRP220397	12.48
DRR048593	aposymbioic hydra M9 strain · aposymbioic hydra rep1	not recorded	not recorded	aposymbioic hydra rep1	DRP003902	4.59
DRR048594	aposymbioic hydra M9 strain · aposymbioic hydra rep2	not recorded	not recorded	aposymbioic hydra rep2	DRP003902	4.29
DRR048595	symbioic hydra M9 strain · symbioic hydra rep1	not recorded	not recorded	symbioic hydra rep1	DRP003902	0.72
DRR048596	symbioic hydra M9 strain · symbioic hydra rep2	not recorded	not recorded	symbioic hydra rep2	DRP003902	0.00
ERR13389755	unannotated	not recorded	not recorded	not recorded	ERP162636	0.00

Source: CnidoSite RNA-seq expression matrices (HVIRI_TPM, StringTie quantification over 29 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.