Gene detail

Detailed information of BRAKERKREP00000026534.1 in Hydra viridissima

Genomic Location: :...
NR annotation: XP_047144391.1, thioredoxin domain-containing protein 11 isoform X1 [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

BRAKERKRET00000026534

ATGCGTGAAAATGAGAACAAGTCTCTAGTTTATGAAGATGTAGAAAGGAgcaAATTTGTCTGTTTTGAAACATGGGCGAACCATATCATGACAGCTAGATATCATAGAGTGCCTAATTTTACAAGAATTTTGCATACTACAAAAGTTATTGTCATGGTGTTGTCAGGCATCGTATGTTTGGTCAGTCTTAGTTGGTGGTTATGGTTATACTGGGGGTTTGTTCTCTCTTATCAGCAAGAAGTTCATGGattatttcctttaaattCATCTGTAATAGACATAAAAGATGGCTCTATGCGTGAACTGCTCAATATAGTGCGCAATAAACCTATAAACATGGTAATATTTTATGCTCCATGGTCAGGAGATAGTATTGCATCAGTAAAGGAATTAAGTGCTGCTAGCCAGTTTCTAACAAGTCCAACTgttgCATTTATTTCAATCAACTGTTGGGAGGGATCTTGCAAAAATGTCTTTACAACATATTACTTTCCTAGAATCTTCTTATACCATACATCAAACACACCAATCGAATATCTCTTTGATATCGATTTCTACAATATTATAAGTTTTATCCAATCTGCTGTTAGACCTTGGATATACATAGGAAATAAACAACAGTTAACAAACTTCTTGAATACTGATAATTATGTAATAAGCTATATGGATAAgaagtttattcaaaatggtAATCGTTATCAGACTTTTCTCAGTGCTTCTGTACGCCTAATAAATAGAGCTAACAAGCCAAAAATAGGTCTTATTATTGATAGTGAATTAGCAGTCTATGCCAAACTTACTGCTCATGGGCAAATATGTTCTAGTGGCTTTTTACGAAAAATGAAGtgttATCCATTGAGTGGGACATATTTTGTTGATGACATTATTCATTGGATATCTGTACACATAAAAGAGattGTTTCAGAGTTGACTCCAAATGCAACTGATGCAAGCTATTATCTTAATTCACTAAAGAAAACACCAGTTGCTCTCTTGGCATATTCCAATAACACTTTACACCATCAGTTTCAACATGCTGCATTAACATATTACAACTGCACCTGCCCTATAATTGAGAACaatattcataaacaaaaatgtttgttcTCTCGCAAGCAAGATAGATGCATTACATCATGGAATCTAGGAATTGTCTGTACACATTGTCAGTTTTGTTATGGAGTCTGTGAATGCAGCTCATTTATGTCTAAGTCCCACATTCCACTATTGCAAAGTTCTGGAAATTGTTTATCGAGTCGTATTTCCACGTATTACTTTCAAGACTCCTATTCTGTatgctgttttaaaatatctagtAAAGGTACATTGAAAAAATGGATTCCTTCTGGACACTTTATtgacaaagtaaaaaacttgaatttgaAGCAGACATggtttaaaatacatttaaaaacttttttttttaataaaaaacaagctgTCCCTAAAAGCTCTAACAAACTTCAAAGATGTGGTTTATCTGCGGCTTGTTGTAATACTAAAGATGGTCAACTTCCACACAAGTCTTTTGAAGGACTTGCATGTAAGACTAATCGAACTCTAAGTTTTTATACAATGaactataataaatataaatttattctaaatagTGTTGGTGTAGCAGATGCACCCAGTTTGCTGATATTTGATGTTTTGTCAGAAGAAAGCTTTGTGTCCAGAAACCTCACATACAAAGTTATAGttgactCAATCATGAATTTTACAAATGGCTACCTCCAACAACACTTTGAATCATTAAATACAGAGAAGGAAAAAGATGATCAGTCAGGAAAAGTAACAGAGTTAACTTCTAGCTCatttgaagattttattttgaaaactactAAGTGGCCATTCTGCAAGCAGTTGTGTCCATATTGcgattttaacaaatatattagGGATGATGTTGATAATGAACTTATGATCCATTGCTTACATAAGGAGTTTCAAACCATGTGTACTATGTATgatgttaagaaaataaagtcTGTTTATTTTGGAGGAgGAACACCAAGTTTGGCTCCTCCAAagttgataaataatttattagataaaatttgCAAGGATTTTGAGGTTGGCTGTGAAATATCAATAGAAGTGAATCCTACAACTActgagaaaaataaattaagCCAATTTAAATCTGCTGGTATCAATCGTGTGTCTATTGGAGTGCAGGCTCTAATTGACAATGATCTGAGGATTTTGGGTAGAGAGCATAATGTGAATCAAGCCTTAAATTGTTTTGAACATGCATATGATATTTTCAATACCAATGTTTCAATCGACATAATGTTTGGGAGACCAAATCAGACCCTTGATGGTTGGATATCTGAGTTGGAACAGATAATAGCTTTAAGGAGTAAACATTTGTCACTTTATCAATTGACGATGAAGAAAGGTACTCCAATGCagaaacaatacaaaaaagggcaattgCAACTACCATCAAATGATGCTTTAGCTGATATGTATGACACAACTGTTAagATGCTAGAGggtacaaaaataaaaagatatgaaGTTTCTAACTTTGCTGAGaaaggTTTTGAATGCAATCATAATCTATCTTATTGGCGAGGAGAAGATTACATAGGGATTGGACCTGgtGCTCATGGAAGACTTATCACACCTGATGGTTTATCAAGACATGCCTTAGTTCAAATTGCTGTGCCAGAGCATTGGATGAAACAGAAAGAATCAGACATCTTAgaagaatttatttcaaaacttgcTGCTAAAGATGGAATGTCTATTCATTCAGTGTGcaactATGACTTGATTTGGGaagaaattaaacataaaattgaagaaagaaagcaaaaaagtgAACGTTTCAGTATATCACTGGATGAGTTTACTTCTTCAAGGAATCGACGATACACGAACGTTAATGTTCATGAGCAAAACTGTCACTACAATCTTGGTACGATTAGGAGGTCAGCTGTATTTCCTGCTGAAAATTGTCTtgatattcttaaaaataatttgcctGAGTTTTGTCTGgatgtttaa

Transcript

BRAKERKRET00000026534

Protein

Uniprot

Uniprot term	Description
A4IGH2	Radical S-adenosyl methionine domain-containing protein 1, mitochondrial OS=Danio rerio OX=7955 GN=rsad1 PE=2 SV=1
Q5SUV1	Radical S-adenosyl methionine domain-containing protein 1, mitochondrial OS=Mus musculus OX=10090 GN=Rsad1 PE=2 SV=1
A5D7B1	Radical S-adenosyl methionine domain-containing protein 1, mitochondrial OS=Bos taurus OX=9913 GN=RSAD1 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04055	Radical_SAM	Radical SAM superfamily	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR034505	Family	Anaerobic coproporphyrinogen-III oxidase	Interproscan
IPR007197	Domain	Radical SAM	Interproscan
IPR004559	Family	Heme chaperone HemW-like	Interproscan
IPR006638	Domain	Elp3/MiaA/NifB-like, radical SAM core domain	Interproscan
IPR036249	Homologous_superfamily	Thioredoxin-like superfamily	Interproscan
IPR013785	Homologous_superfamily	Aldolase-type TIM barrel	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13932	COPROPORPHYRINIGEN III OXIDASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0005739	Cellular Component	mitochondrion	Interproscan
GO:0006779	Biological Process	porphyrin-containing compound biosynthetic process	Interproscan
GO:0051539	Molecular Function	4 iron, 4 sulfur cluster binding	Interproscan
GO:0003824	Molecular Function	catalytic activity	Interproscan
GO:0051536	Molecular Function	iron-sulfur cluster binding	Interproscan
GO:0004109	Molecular Function	coproporphyrinogen oxidase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K06871	K06871; uncharacterized protein	-	Function unknown	-	deepkoala