Gene detail

Detailed information of BRAKERKREP00000026545.1 in Hydra viridissima

Genomic Location: not available for this species
NR annotation: XP_002155943.3, uncharacterized protein LOC100206389 isoform X1 [Hydra vulgaris]
Species Hydra viridissima · all data for this species · gene families

Sequence

CDS

BRAKERKRET00000026545

atgtcttcAACTGCCTTAAGACCTACACCTATGGGTTCTGAAGCAGAAACAACCATCTTTGAAGAGAAAACActaaaaacaaccaaaattGCGAGTAACAAGGATGAAGTAGCAAATAAAcatcattattatattaaggacaatgaaaaaaaatcgcATAGTGAAAAGCTGATTACTACATGCTATCCTAATTACGAGAAATGGAAAACAAACATTCAAGTACTTTTAGAAGATGATGAAGGTATGAGGACATTTTATGAGTTTCTTGGAACTGATCAACTTTCTGTAATATTCGATTGCTGGTATTCGTGTAAAACTTATCGTAATCAACATCCAAATAAAGCTGCCGCAAAAGAAGTTTACTCTCGTTTTGTACGTATTAAAGACTCTAGAGTACCGATTTCTGATCAAGCCCGAAATAATCTCGCACTTCGGTTGCGTGCCAACGAAATTACGGATACATTATTGCTAGAAATCGAGCATGAGGTTTACGCGAATCTTAGAGACGTTTGTTAccctaaatttttgaagtcagatttttttacattttactgtGAAACGAACGGGCATGTAGAATATATTCCAAGCGACTTTCATCGGTTAAATCAAGGGGTTTTAAGCAAGATACCACATAGCTTGCCGACACTCGCTGAAGATCACACAGTCAGTTACCAAACGCAGACAAGtgaatCTGTAGGGGATCTAAATTGCCACAGCAATGATTATGTTCCTGATATACCTGCTTTTAAATCGCGTACACAGCGTATGGAATCTATGAAACAATTGGCTCCGGAACAATTTGCTAAATTACTTTCTGAGAAATTAGAAAAGTTGATACTTGATAGAGAAGTAGCTGAACGAAGTTTTGTTCAATTACCAAATCAAACCTCATCAAATCCACTTAGTCAGCCTTTACAAAGTACCTATGAAGCTACTTTAAATGATGTAGATACTCAATCATGGTTGATGCCACCAGCTTCTGTTCGATATAGCGTTGCTGGAGCTTCATCAACAAGTGGTTCCTGTGTAAATAATGATCAACATCCAAAGTATCGCAATCTTGCAAAAGAGTTCCTCAATGCAGTTCATCATGGCATACGAAATAATCTAGGGGAATGTCAGTGTATGTCATGTCAAGGTTCTCTTTCTTATTGTACTCGCACCTCTCataatcattattttcaagaaaGCTATCTTAATTCTAATAATAACCAtgaactgttaaaaaatgatagaatCTTTAACAATAGCAACTTTGAACAATCACAATTCTTCAATACGTTGGAATACAATACTCATAATGCTTTTATTCAGCCAGAACCCCAGCAACAAGTTGACACTAGTAAAATATATGCCTGGATGgagaaaaatgaaagattaGAGAACCAAATGGATTATGTTGCTCCAACTCCAATTGTGAGAcgaaaaaaacagcaaaatgtTCCAGAAGCTCCTATCGCCCAAGACCATAACATGCCTTTATTACCTCAACCAGATACAGGAACTGTGTTAACAGAAGTTAAGCGAGTACTTGAAGAACCGAAGACCTCAAGAAGATCTTCATCAAgGTTGCACCAACAGCGACCAACGAATCATATTGGTGACCACATGTCTGCTTACAGCGACCCGTCATATGACCAGCGTCATCGTCATGTTGGTAACGCTTGGTCTTCTTTTTCCGATACGAATTCCGTTGTGTCATATAATCCATCTCAGATATCCAGTGTTCCTTCGTGCGCGTCTCGTTTATGGAATCAATATGGTTATTTTGAACCCAAAAACGAGCTTTTATACCGTAGCCGCCATCTTTCAGAACAAAATGATATGACGCAacgaaatgaaaattttgtttctcaTACTCATCGCGATCGTCATAGTGATCCTAATAACAGAGACTTAAAAAGCGTGAGAAGGTCTGATGTTCACAGTGACGTAAGTCATCCGCAAAGTGAAGCTCGTAGCGAAAGAACGCACGGCAGTGGAAACAGTAAGAGAAGTACACAAAACTCCACAACAATAACCTATTATTTTGGCAATGAGCCAATCCCCTATCGTATAACAATCCCTTCTCTTGAAGTCACACTTGGACAATTTAAGGCGGAAACTAAACGCGGGaattttcgctttttttttaaaacaatatctgCCGACGACGGGGAAGTTGTGTATGAAGAACTGCGGACCGATGACGAGTATTTGCCaaggtataaaaataaaatcatcggcaaaattgaaaaagttgagtaa

Transcript

BRAKERKRET00000026545

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006542 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00615 all species →	RGS	Regulator of G protein signaling domain	Domain	Interproscan
PF00778 all species →	DIX	DIX domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016137 all species →	Domain	RGS domain	Interproscan
IPR001158 all species →	Domain	DIX domain	Interproscan
IPR044926 all species →	Homologous_superfamily	RGS, subdomain 2	Interproscan
IPR029071 all species →	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan
IPR043581 all species →	Family	Axin-like	Interproscan
IPR038207 all species →	Homologous_superfamily	DIX domain superfamily	Interproscan
IPR036305 all species →	Homologous_superfamily	RGS domain superfamily	Interproscan
IPR024066 all species →	Homologous_superfamily	RGS, subdomain 1/3	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46102 all species →	AXIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0008013 all species →	Molecular Function	beta-catenin binding	Interproscan
GO:0019901 all species →	Molecular Function	protein kinase binding	Interproscan
GO:0030877 all species →	Cellular Component	beta-catenin destruction complex	Interproscan
GO:0031625 all species →	Molecular Function	ubiquitin protein ligase binding	Interproscan
GO:0032436 all species →	Biological Process	positive regulation of proteasomal ubiquitin-dependent protein catabolic process	Interproscan
GO:0045860 all species →	Biological Process	positive regulation of protein kinase activity	Interproscan
GO:0048468 all species →	Biological Process	cell development	Interproscan
GO:0060090 all species →	Molecular Function	molecular adaptor activity	Interproscan
GO:0090090 all species →	Biological Process	negative regulation of canonical Wnt signaling pathway	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02157	AXIN1; axin 1	-	Protein phosphatases and associated proteins	ko01009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of BRAKERKREP00000026545.1 across 29 RNA-seq samples of Hydra viridissima. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

29Samples

0TPM > 0

7Conditions

0.0Max TPM

0.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
whole body	18	0	0.00	0.00
Whole	6	0	0.00	0.00
aposymbioic hydra M9 strain · aposymbioic hydra rep1	1	0	0.00	0.00
aposymbioic hydra M9 strain · aposymbioic hydra rep2	1	0	0.00	0.00
symbioic hydra M9 strain · symbioic hydra rep1	1	0	0.00	0.00
symbioic hydra M9 strain · symbioic hydra rep2	1	0	0.00	0.00
unannotated	1	0	0.00	0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study
SRR21134050	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134051	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134052	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134053	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134054	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134055	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134056	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134057	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134058	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134059	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134060	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134061	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134062	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134063	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134064	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134065	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134066	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134067	whole body	whole body	not recorded	not recorded	SRP392977
SRR10058802	Whole	Whole	not recorded	not recorded	SRP220397
SRR10058803	Whole	Whole	not recorded	not recorded	SRP220397
SRR10058804	Whole	Whole	not recorded	not recorded	SRP220397
SRR10058805	Whole	Whole	not recorded	not recorded	SRP220397
SRR10058806	Whole	Whole	not recorded	not recorded	SRP220397
SRR10058807	Whole	Whole	not recorded	not recorded	SRP220397
DRR048593	aposymbioic hydra M9 strain · aposymbioic hydra rep1	not recorded	not recorded	aposymbioic hydra rep1	DRP003902
DRR048594	aposymbioic hydra M9 strain · aposymbioic hydra rep2	not recorded	not recorded	aposymbioic hydra rep2	DRP003902
DRR048595	symbioic hydra M9 strain · symbioic hydra rep1	not recorded	not recorded	symbioic hydra rep1	DRP003902
DRR048596	symbioic hydra M9 strain · symbioic hydra rep2	not recorded	not recorded	symbioic hydra rep2	DRP003902
ERR13389755	unannotated	not recorded	not recorded	not recorded	ERP162636

Source: CnidoSite RNA-seq expression matrices (HVIRI_TPM, StringTie quantification over 29 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.