Gene detail

Detailed information of BRAKERKREP00000027182.1 in Hydra viridissima

Genomic Location: not available for this species
NR annotation: XP_047128515.1, uncharacterized protein LOC124809060 [Hydra vulgaris]
Species Hydra viridissima · all data for this species · gene families

Sequence

CDS

BRAKERKRET00000027182

ATGGCCAACATTCTCTGTGACCTACAGGCTCACTCCAGCTTACACCCCTGTGCCTGGTGTGATATTGATGCAAACAACCTTGAAAATGCAGGAACATTTCGAACTTTGGGCTTCCTTAGgaaaactatatataaaactaacttaactGACGcccaaattttaatttgttttgctGCTTTGCACACAAAACAGTATCGAGGAAGATTATTACAAGTAGCTACAGGTGAAGGTAAATCAACTATTGTAAGTATATTAGCTATAGCTCATGCATTAAAAGGTCAAAATGTAGACATTATAACAAGCTCTCCTGTTTTAGCAGAAAGAGATGCTAAAGAAAAtgctaaattatataaaatgtttgcttTAAGCACTGGTAGTAATAGTGACAAATCCATCTACATTAAAGGAGCAAAAACTTGCTATAAAAATGATGTGGTTTATGGAGATGCTGCTCAGTTTCAATTTGATACTTTAAGAGAGGAGTATAGTTGCCTCGGTACTTTATCGACAAGAAAGTGTGAGGTTGCAATAGTTGATGAAGTAGATTGCATGTTAATTGATGATAGTTCTAAGATTGCCAGACTTCCAAGTACTATGGCTGGCATGGATCAGTTACAACCCATATATCACTTTTTATGGCAAAGACTTACCTCCTTACAAGATCGATTAATCAATATTAATGGCAAGGAATATATAGtatatggaaaaataaaatttaatcaagataaaatagttttggaATATGCAGATGATAAAGGAGATATGTTTCAAATTtccgatttaaaaaaatttattgactCTGGTGGTTCCTTAAATGGTATTGGTGAGGAGATTAAAGGTGACCCTAATGTATATCTTAACCAACATCTACAGCACTACTTAACTGCTTTAACATCAGATGAAAATATCAGCTCAGAAAACGTCATACGTTTTGGTATTAAACCAGaaggtaaaattaaaataccaaaCAACCTTAAGGAGTTTGTTAAAACACAAATTCACAAATGGGCTAGAAATGCTATTGAAGCGTTTAACTATCAAGAAACAGTCCATTACGTTGTGCATGAAGGCATGATTATGCCCGTAGACTTTAACACCACCGGTGTTGTGCAAAACTCCACTAACTGGAGCGATGGCTTGCATcagtttttacaaatcaaGCATAACTTGAGAATGACTTCTGAGACTCTTACTACCAACTTTCTATCAAATATcggatattttaaaagatatcaaaataatctttttggTCTTACCGGAACGCTTGGATCTGTAAAAGCTAGAGAAGTACTATCAAGAGTTTACAACGTGGATCTAGTAAATATTCCTCCTTTACATCAAAAGCAATTTATACAACTTCCGGATATAATTGCACTAAATTATGAGCTATGGCTTCATGAAATTACCAATTCTACTATTCGTGAAGTAAATAAGGCTAGGGGAACATTAATTATTTGCAACACTATTGAGCATGCACGAATTATTTCTCAAAgccttaagaaaaaatatagagCAGAAGCAATCAAGCTTTATGACATGAATAATATGAATCAAGAGAAAGATATAGAAAAGGTTAGCCCTGGAGAGATTATAGTTGCAACAAACTTAGCTGGGCGTGGTACAGATATTAAAACTGATGATATTGAAGAAAATGGAGGGTTACATGTTATCATAACATTTATGCCTCCTAATCAACGAGTTGAGGAACAAGCTTTCGGCAGAACCTCAAGGCAAGGCAAACGTGGCACTGGTCAAATGATATTAAATACCCAAAATATAGCACATACTTCAAAGGAAGCTAGAGATAAAGATGAAGTAGAAAGtcttgaaatatttacaaatttagaacttaaaacaatagaaacaaaagataagctgtttaatgaattttgcaatttattaATGGATAAAAGAGCTGagattagaaaagaaaaaagtcctATAACTAAAGTATGGGAAAATATCAAGGACCTATTCATCAACGTGATGCCATCAGTCTATGAAGTTAACGTGCTCTCTGCTATTGAAGAACAGTGGGCagtgtttttaagaaaaactggTGATGGgacaataaaaattgaacaagCCGATTGTGAGTATAAAGATTTCGCTATACAAGTTACAAGTGATTACAAAAGTGGAACTATAATAAAGAATCCTTATTATCACATAGCTATAGCAAAcgattttatgttaaataacaGTAGCAAATATGAAGAAGCTAAGGATCATTATGAAAAAGCTATTGAACTTGATGAGAATTTTAGTAGTGCAGCTTTTGTAGGTAAAGCGTGGTACTTTCTTCAAGGCAAAAAAAGTTGGCTTGCTGAGGGAGACATCAAGGGACATAAGCATGTTgataattataaacataaaagtatTGATAACCTTAATAAAGCTCTATATATTTTAGGTAAAGAGATGggtacttttaattttatcctATCTTATTTGTATCATCAAACGAGCGATATTCAAACTGATTTATCTAagcaaataattcaaaaaacaagtCTTTTAGGTTCCTATATTAAAAGCATTCAGAAAGCTATAtctgttatcaaaaaatctcaaagGTTAGTTGACATTAAAGGGATTAAAGAAAACCAAAGTATATCTTACTTTGAGctagaaagaaataaaaatagtctCATGATTCAAAAACTTAGTGATCTTGCAAATTATGATCATTTTGAAGTtacatttaatgatttaactGTAAGAAATGACAGTGGTAAAAAAGATCAAGCTATTGAAACTATAAATGTAGCATTTAAAGGTTATCATGGTCCGAGTAATAACATTGTAGAAAAGGCAGTTAAGACTTTAAGTACATCTTGTATACTAAATAAAGAATACAACGATGTTTATATCACTACCAACCATATAAATGCTGAAATGCTACGTGCTCTACTAAATCCTGATATTGAAGTTGCAGAAACAACCAAGGAAGTTGCAATAAACCAcctaaaaagtgttttttttggaAGGTATTTTCCATCACAGCATGTTAACTTAACTATTATTGGCGAAGATAATTTAAGAGACATTAAGAATTCTTTACCAATAGCATTAGCAAGAGACATTATCAGAGCAGAGAGTGATAAATATCGCTtcagtttaagttttttaaatcctgGTAAAATATCTGACAATGAAGTTATGGAAGAAGTAACGAAAGAAATGGCGCTAAAGCAGCTAAAAAACCGTATTaccatttttcaaagttattcaTTACCTACTTCTCTGGTTAACTTAACTATTACTTCAGAAGACGGAACAAATCCACAGGTAGCAGAAAATATCGAAAGAAACAAAGCAATAGATATTATCAACAAAGAGATTGGTAAATGTcgttttaatttaacatttataaatgaaaacgAAACAGCTGCTACTATTCAAAAGCATAAAGTTAGTTTtgacttgaatttttttcaactaccCTTAAGCATTgctcttgaaaaaattgaaaggacAGAATTTGAATCTGTTACACTTGAAATGCAGGGTACCCCAGAACACCTGCTTGAAGCTGTTAGGTCTTCAAATAAACATGTTCAGGTTTTAAGCACCAAAGAAGaaggttttatttataatacattAGATTCGAAAAGTGCtctaaaaaagatacaaaaagaaaaagttaaatctatTAAACTTGATAGTTTAAACAAAGAAGAAGCGCagcaaattgttaaattatgtCCAGAAtctaaatttgatattattctGGTTTCAGTAAATCAGAAATCTGCAATTAATgctctaaaaaattttgaaggcGAGGGATATGTTCatgctacttttaaaaaactggatAATGTTAAAGCAAGAGAACTTATTTCCAAATTTAGAGAAGCAAATCAAGAGTTttctattacatttaaaaatttaaaacactcGCAAGCGAAGCAATTAATACAAAAAGCTTCAATAGAACAAGAAGAAATAGAAatcactaaaattaaaaatttaagtgaacTTACTTTGGAAGAACATAAACCTGTTCTTGAACTTCAAGAATATGCCGCAAGGGGAATTGAAAACTTATtagaaattaatgaaaaaagattcatTCCTTGGAGGAGTATAGCTATTGTAAGTGTTCTTGCAGCTATTCAAACAACAGTAGTTGTAGCACTAATTGCGTCGGGCTTTGGTGCCACTGTAGGATTAGGATTAATTGCTGAAGGAGCTGCTGATTTGTTTACAGCATATAGAGCCTATAATACAAGGCAGTTTAGTTGGATGGATTATGGGGCACAAAAAGCAGTAAGTCTTTTTATATCAGCAATTTCAATGGGATGGGGAGCAATAAAAAGTGCTGGAAAAGGAGCAGTAGTTCTTGCAGAGGAGATAGGAACAGAGGCAGTTGAACAAGCAGCAACACAAGCTATAACAAATATAGAAACTATTAGGCAAACAATGGTACAAACAGGACAAAATCTAAAAGCCTTAGCTTTAAAGCAGTTTGGAGTAACTTTGGGAGAAATGGTATTAAGAGAAGGTTTGACAATTGCAGTAAATTCTCTGTCACACTTAGTGTTGGAACAATTTAAACCAGAAATTTCTAGAAACATCCAAATCAAAGTACAAGCCAAATTTTGTGGGCCGTTATTAAAAATGGTGCGTATGATGTATGCAGCAGATATACTTATTAAGCatgctaattttaaaacaaaaattgataacttgGTAGCGAATATAGTCAATCATAAGAATAACACCGTTTTACGTAAGCTATGGGATTCTATAGGTATTATTGGATGCAACTATATTGTatcaaaagcttttaaagtaaatggCGCACTTAGTGCAAGCATTATCAGTACGTTAACTGAGATAAATAAACTTGTGATAATAATAGATCAAGTATTTGATAATCTAATGAAAAACCTTACTCGGCTTGAGAAGGAATCTCTGCTGATACCGCATTTAATCATTCACAAATGCGAAGTAAGTATGTCAGatgcaaaagaaatttgtgCGTTACTTAAAGGACAATGTGTGATAGGAAAAGATGGCCATTTAAACCCTTCAGCTTTTGAGAATATTTCAACCTCtcagaaaacaaagaaacatAGCCAAAGCTCTGCTCTGCTTAACTCATCAGAAACATTTGAATTTCAAGACtcagcaaaaaaagttactcaAATAGACAAGATTGATCTTAATGATAAGTATAATTCTCATAAATCTAATGTGATTGATTCTCTAAAGTCATTTTATCAATGTAAATTGCGTTTTGAAATAAGCGATTTTAGTGTAATTATGAAGTCCGTTTCAGATGTAATTACTGATCAGATTTTAGTAGTTGTAGAATCACGCTTGATTTCCCCTTGGAGTAGTTATGGCATAGGTGCACTGACAAATACTATATCAACAGAAATTCAAAGTAGCATTATAAAAAGTCAGCTCGATTGCGAAATAAAATCTTCTGAGGAAAATCGTGAGAAGTTagagcaaaaacaaaataaaacatctgAAGACTTAagtgaaatagaaaaattaaaagctaaCCTTGCAGAAAATAGACATTTGAACAGAACAAATAACACTGTTGCTACCTTGATTGGTCTTGAAgcgaaaaaatatattgctgCATACGAGGTAAGAAAATATgcacaaaaagtaaaaaatggtaAACCTTTAGATCTTGCTGAGCTATTTACTATGGCTACTGCAAACTGCATAAATATCAAAGTAGTAGATTATCCAGATTATCAAGTAACTGAAGAAGATAGGAGTAAGGATATTAAAATTCTAGCCTGTATTAAAGGTGAGAGAAATTCAACTGACTTTTTTCAGATGATTGACTCAAATGGTAATATTTTAAGTCAACTTGGTGATGGCTATTCTGTTTTTGAAAGCTTAACAGGCAAATCTGTAGAGCAGCTTCGGAATGAAATGGCGCTTGCTTTAgagaataattttgaaaattttgtaaaatcaataaaagcaCAAAAATGGGTAAAAATTCACCACCCAGAAAAACTACAACAATGGATTAACAATTATCATATCGACAAAGCAAAACAagttaacaaaacttattttccaCAAGGCACTTCTGTTTTTTCTGGTCTCAAAGTTTTACGAGAGGTAATTGAAATGGCACCAGGAGAGGTAAAAACGCATCTAGAAAAAATGAAGGAAGAAATGGCTAAAAGTGAAAAGGCTATAAGCGAAGAAAAaaccgttttttaa

Transcript

BRAKERKRET00000027182

Protein

BRAKERKREP00000027182.1

MANILCDLQAHSSLHPCAWCDIDANNLENAGTFRTLGFLRKTIYKTNLTDAQILICFAALHTKQYRGRLLQVATGEGKSTIVSILAIAHALKGQNVDIITSSPVLAERDAKENAKLYKMFALSTGSNSDKSIYIKGAKTCYKNDVVYGDAAQFQFDTLREEYSCLGTLSTRKCEVAIVDEVDCMLIDDSSKIARLPSTMAGMDQLQPIYHFLWQRLTSLQDRLININGKEYIVYGKIKFNQDKIVLEYADDKGDMFQISDLKKFIDSGGSLNGIGEEIKGDPNVYLNQHLQHYLTALTSDENISSENVIRFGIKPEGKIKIPNNLKEFVKTQIHKWARNAIEAFNYQETVHYVVHEGMIMPVDFNTTGVVQNSTNWSDGLHQFLQIKHNLRMTSETLTTNFLSNIGYFKRYQNNLFGLTGTLGSVKAREVLSRVYNVDLVNIPPLHQKQFIQLPDIIALNYELWLHEITNSTIREVNKARGTLIICNTIEHARIISQSLKKKYRAEAIKLYDMNNMNQEKDIEKVSPGEIIVATNLAGRGTDIKTDDIEENGGLHVIITFMPPNQRVEEQAFGRTSRQGKRGTGQMILNTQNIAHTSKEARDKDEVESLEIFTNLELKTIETKDKLFNEFCNLLMDKRAEIRKEKSPITKVWENIKDLFINVMPSVYEVNVLSAIEEQWAVFLRKTGDGTIKIEQADCEYKDFAIQVTSDYKSGTIIKNPYYHIAIANDFMLNNSSKYEEAKDHYEKAIELDENFSSAAFVGKAWYFLQGKKSWLAEGDIKGHKHVDNYKHKSIDNLNKALYILGKEMGTFNFILSYLYHQTSDIQTDLSKQIIQKTSLLGSYIKSIQKAISVIKKSQRLVDIKGIKENQSISYFELERNKNSLMIQKLSDLANYDHFEVTFNDLTVRNDSGKKDQAIETINVAFKGYHGPSNNIVEKAVKTLSTSCILNKEYNDVYITTNHINAEMLRALLNPDIEVAETTKEVAINHLKSVFFGRYFPSQHVNLTIIGEDNLRDIKNSLPIALARDIIRAESDKYRFSLSFLNPGKISDNEVMEEVTKEMALKQLKNRITIFQSYSLPTSLVNLTITSEDGTNPQVAENIERNKAIDIINKEIGKCRFNLTFINENETAATIQKHKVSFDLNFFQLPLSIALEKIERTEFESVTLEMQGTPEHLLEAVRSSNKHVQVLSTKEEGFIYNTLDSKSALKKIQKEKVKSIKLDSLNKEEAQQIVKLCPESKFDIILVSVNQKSAINALKNFEGEGYVHATFKKLDNVKARELISKFREANQEFSITFKNLKHSQAKQLIQKASIEQEEIEITKIKNLSELTLEEHKPVLELQEYAARGIENLLEINEKRFIPWRSIAIVSVLAAIQTTVVVALIASGFGATVGLGLIAEGAADLFTAYRAYNTRQFSWMDYGAQKAVSLFISAISMGWGAIKSAGKGAVVLAEEIGTEAVEQAATQAITNIETIRQTMVQTGQNLKALALKQFGVTLGEMVLREGLTIAVNSLSHLVLEQFKPEISRNIQIKVQAKFCGPLLKMVRMMYAADILIKHANFKTKIDNLVANIVNHKNNTVLRKLWDSIGIIGCNYIVSKAFKVNGALSASIISTLTEINKLVIIIDQVFDNLMKNLTRLEKESLLIPHLIIHKCEVSMSDAKEICALLKGQCVIGKDGHLNPSAFENISTSQKTKKHSQSSALLNSSETFEFQDSAKKVTQIDKIDLNDKYNSHKSNVIDSLKSFYQCKLRFEISDFSVIMKSVSDVITDQILVVVESRLISPWSSYGIGALTNTISTEIQSSIIKSQLDCEIKSSEENREKLEQKQNKTSEDLSEIEKLKANLAENRHLNRTNNTVATLIGLEAKKYIAAYEVRKYAQKVKNGKPLDLAELFTMATANCINIKVVDYPDYQVTEEDRSKDIKILACIKGERNSTDFFQMIDSNGNILSQLGDGYSVFESLTGKSVEQLRNEMALALENNFENFVKSIKAQKWVKIHHPEKLQQWINNYHIDKAKQVNKTYFPQGTSVFSGLKVLREVIEMAPGEVKTHLEKMKEEMAKSEKAISEEKTVF

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q11YU5	Protein translocase subunit SecA OS=Cytophaga hutchinsonii (strain ATCC 33406 / DSM 1761 / CIP 103989 / NBRC 15051 / NCIMB 9469 / D465) OX=269798 GN=secA PE=3 SV=1
A8Z5Z5	Protein translocase subunit SecA OS=Karelsulcia muelleri (strain GWSS) OX=444179 GN=secA PE=3 SV=1
B9KFM5	Protein translocase subunit SecA OS=Campylobacter lari (strain RM2100 / D67 / ATCC BAA-1060) OX=306263 GN=secA PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0011145 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07517 all species →	SecA_DEAD	SecA DEAD-like domain	Domain	Interproscan
PF01043 all species →	SecA_PP_bind	SecA preprotein cross-linking domain	Domain	Interproscan
PF00271 all species →	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036670 all species →	Homologous_superfamily	SecA, preprotein cross-linking domain superfamily	Interproscan
IPR011115 all species →	Domain	SecA DEAD-like, N-terminal	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR014001 all species →	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR011130 all species →	Domain	SecA, preprotein cross-linking domain	Interproscan
IPR000185 all species →	Family	Protein translocase subunit SecA	Interproscan
IPR001650 all species →	Domain	Helicase, C-terminal domain-like	Interproscan
IPR014018 all species →	Domain	SecA motor DEAD	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR30612 all species →	SECA INNER MEMBRANE COMPONENT OF SEC PROTEIN SECRETION SYSTEM	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0017038 all species →	Biological Process	protein import	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006605 all species →	Biological Process	protein targeting	Interproscan
GO:0006886 all species →	Biological Process	intracellular protein transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERKREP00000027182.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.