Gene detail

Detailed information of BRAKERKREP00000027358.1 in Hydra viridissima

Genomic Location: not available for this species
NR annotation: XP_002164851.3, histone-lysine N-methyltransferase NSD2 [Hydra vulgaris]
Species Hydra viridissima · all data for this species · gene families

Sequence

CDS

BRAKERKRET00000027358

atgaagctAAAGGTTAAAAAGGTATACGCTGTAAAATCAAAAGCAAAgaataaatgcaaaagagGATTTCCATATATAAACGACAACGATAGTACACAAGCTATATGCTTATTGCCACTCCATACAACTGAGAAATTAGTAGTTAGTTCTGAAGGCATGAAAGATCTGATTGATAATTTTGACAGGactgtttttacaaaagtcaAAGCTAATGATTCTTATCTTGTTGGAGATGTATTTTGGTCAAAAATCCCTGGTCATAATTGGTGGCCTTCTATGATATCTTATGATCCAAACACTGCTGTATTTTGTCAAGCAGTTAGAAACTCTGTTAAGTATCATGTTCAATTCTTTGGTGATGTACCTACAAGAGGATGGGTCTCTAAAACAAATCTCATGGATTTCAGTGGCTTGGACGCATTTCTTTCACTCCCAAATCGTTTAacatctttgaaattttcaaattcatcATTAAAAGAATCTTGGGATCATGCTGTTATTCAAGCTGAAAGTGCATTGTCTTTAGATCGAAAGCaaagaaaacttatttgtaCTTATAGCTATCAAGATAACTTACCTGGAGCTGCCAATATTAAATTATCCAAGAAAGCaaaattacctaaaaaaattataactgaAAAGTCTTTCCAAGAAAACAAGATATCTGCAAAAACCAATGCTGACACTTATCATGAATCAATACCAGTTTTTAACagtgaaacagaaaaagatggaaaatctTTTGGTAAGTTATTGAATGACAGTTGCCTGGGTAATGacagtttaaaagtaattttgaaagaaGTTCCTTTAAACCTTCTTTCTGCTAGCTGCATTCAAAGGGAATTCGAAAGTGATAATGAAATGGATATCATTGAAGTGAAACGAACACgtaagaaaaagatatttgaagaTTTTCACACTGGATCAGAACTTTTTCAAGGTAATAGTTCAGAAAAGAAGttaaagactaaaaaaaaaataaaaagtgaacaACTAGAAATAGTGGTCCCTACTGGTCAGCATGGAAAGGAAAATGTTGTTtcagaagaattaaaaaaagattcctcttgcaaaataataaaaaatgagccTATAGGTATTTCCTCTTCAAAAAACTCTCCCAAAACCTCTCAAGATAACTACAAGTGTAACATTTATACAAATCAAACTTCTGACAAAAAATGTCGCATAAGCCTGACAAATATGCAGAAAAACTGTACATCTAAAGGAAAAGATAATCTAGACCTTTCGCTAAGTCAAAATGGAATTAGCAAAAAGCGAAAATTAACTTCTATAAAGCCTATAgaaagtaatagtaaaaaaaaaaaagttgactcAAGTTTATCAAAGACAGTGTCAAATTTGACAAGTGCTTTAGAAATTACTCAAGTTAAATTAGATCCAGATCTAAGTGATGCATGGCCAAaccttaaaaaagatttgtattGTAGTATTTGTGAAGGAAGTGAAGGTACATTAATCACTTGCAATGGAAGTTGTTtcaattcttttcattttgattgcTTGGGTGTGAGCTGTTCAAAACCTAGTTTTACTTGCGATGAGTGCTTAACTAACAACCACTGCTGTTTCATGTGCAAAAGTCCTGGAGCCATCATTAAATGTTCCCATAATACGTGTGGGAGGTATTACCATCAAAATTGCTTACTTAAGATTCCTCTTATGCAATCTCAGTTtcaagaaaatacaaaaacatttagctGTCCTTTACACAGTTGCAGTTTTTGTTCTGAAAAGAGCTACAAAAGTCCTTTAAACAAGCTAATAAAATGTATACGATGTCCAACAGCATATCATCAAGCAAGTTGTCTTGTTGCTGGCTGTacaattataacaaataataatatgaTTTGTGACTGCCATTTTCAgccacaaaaaaataacactcTGCACTTAGGTGTCAATGTTACCTGGTGTTTTGTATGCTCACAAGGGGGTTCCTTAGTTTGTTGTGATACATGTCCAGCTTCTTTTCATGTTGAATGTTATGAGGACTTAAAAGAAGTACCAGAAAATTCATGGCATTGCAATGACTgtcttcaaagaaaaaaacccaGATACAATGATATTGTTTGGGTCAAGTATGGAGTTTATAGGTGGTGGCCAGCCAAAGTGTGCATTCCAAGTGAGATTCCAGAAAAGATCCTTAATTTGCCTCATGTTATTGGTCAATTTCCAGTTATGTTTTTTGGTTCAAAAGATTATTCATGGGTTCATTCTggaagagtttttaaatatcaagaTGGTGATAAAGGAGGAAATGCAGCAGGGAAGTTAAGTGCTTCTCTtacaaattactttaaaaaagctatTGAAGAGGCCAAAGAAGCATTTACTGAGTTAGAGAAGCAGCGTGCAATTGTATCTGATattttagggaaaaaaaagttgtataaaccACCTCCATTTAAAGCTATTAAAAGTAATCGCCCTGTCTCTTGCATAAGAAATATACTTGATCAATCTGAGTGGCCTATTTGTGAATGTTCAAAAGAAAGTCTTTGTTCTTCAGAGTCAGAATGTTTAAACAGGATGTTACTGTTTGAATGCAATGCCAAGACGTGTCCAGCTGGAGATAGTTGTCAAAACcagcaaatgcaaaaaaatgaatacaagAAGTGTCATCCTTTTAAAAGCGAAGGCAGAGGATGGGGCTTGATGGCAGacacagaaatcaAATGTGGAGAATTTGTAATTGAGTATGTTGGTGAGCTCATCGACGAAGAGACATGTCATAAACGTGTACGCGAATATCATGAAAAAGATATCTCAGATTACTACTTTCTTACAATTGATAAAGATAATATAATAGATGCATATCCTAAAGGTAATATGTCTCGCTTTATGAACCACAGTTGTAACCCAAATTGTGAAACGCAAAAGTGGACTGTAAATGGAGAGATTCGTGTTGGTTTGTTTGCTACAAAGGATATATCTATTGGTGAAGAGTTATGCTTCAATTACAATCTAGACTCTCTTGGTAATGATAAAAAGCAATGTAAATGTGGTGCCGCCAATTGCAGTGGATTTTTGGGCGTTCCACCAAAAACTCAACATTCAATTGCAATTGCagaaaaaggaaaactgaAGAAGgataaaaagaagataaaaaagcaACAGAGATTTGtacACGATGATGAGTGTTTTGTTTGTGGAGATGGCGGAGAGTTAATTATGTGTAGTCGTAACAAATGTAGCAAAACTTACCATGTTGAATGCTTAAAGCTGGAAAAACGACCTTACGGGAGATGGGAATGTCCATGGCATTATTGTGACGTGTGTGGGAAGCTTGCAAAATCAATGTGCGTATTATGTCCTAACTCGTATTGTGATAAACATTCTGAGAATGAAATTCTCTCAATGAATAAAGTCTCTTTCTGTATTGATCACGAGGAGGAGGAGGTGGCGATGTTCTGTGCTTCTATCGATGGAAACTCAAAAGAGAAGTCTGACTTTTCACTGGTTGTTGCATGTGACTTAAAGGAAAAGGATATGCCAAACCAATTAACCGACATCAGTGCTacagaaaagattttaaacgaCCGTAAAAGAAAGTCTTCAAAAAAGCGTACCAGGGAAGAAGCAACCACGACatcaaataagaaaagttCGAACGGTTGTAAGTCAACTGGTTTAaagaagtcaaaaaaaaaacctaaaagaCCATTAAAAAAGACGGATGTAAAGAATCGAAAGAAATAA

Transcript

BRAKERKRET00000027358

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O96028	Histone-lysine N-methyltransferase NSD2 OS=Homo sapiens OX=9606 GN=NSD2 PE=1 SV=1
Q8BVE8	Histone-lysine N-methyltransferase NSD2 OS=Mus musculus OX=10090 GN=Nsd2 PE=1 SV=2
Q6P2L6	Histone-lysine N-methyltransferase NSD3 OS=Mus musculus OX=10090 GN=Nsd3 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002896 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00855 all species →	PWWP	PWWP domain	Domain	Interproscan
PF17982 all species →	C5HCH	NSD Cys-His rich domain	Domain	Interproscan
PF00856 all species →	SET	SET domain	Family	Interproscan
PF17907 all species →	AWS	AWS domain	Domain	Interproscan
PF00628 all species →	PHD	PHD-finger	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011011 all species →	Homologous_superfamily	Zinc finger, FYVE/PHD-type	Interproscan
IPR000313 all species →	Domain	PWWP domain	Interproscan
IPR001214 all species →	Domain	SET domain	Interproscan
IPR050777 all species →	Family	SET2 Histone-Lysine N-Methyltransferase	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR003616 all species →	Domain	Post-SET domain	Interproscan
IPR001965 all species →	Domain	Zinc finger, PHD-type	Interproscan
IPR019787 all species →	Domain	Zinc finger, PHD-finger	Interproscan
IPR041306 all species →	Domain	NSD, Cys-His rich domain	Interproscan
IPR046341 all species →	Homologous_superfamily	SET domain superfamily	Interproscan
IPR006560 all species →	Domain	AWS domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22884 all species →	SET DOMAIN PROTEINS	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0042054 all species →	Molecular Function	histone methyltransferase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11424	WHSC1, MMSET, NSD2; [histone H3]-lysine36 N-dimethyltransferase NSD2	EC:2.1.1.357	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of BRAKERKREP00000027358.1 across 29 RNA-seq samples of Hydra viridissima. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

29Samples

0TPM > 0

7Conditions

0.0Max TPM

0.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
whole body	18	0	0.00	0.00
Whole	6	0	0.00	0.00
aposymbioic hydra M9 strain · aposymbioic hydra rep1	1	0	0.00	0.00
aposymbioic hydra M9 strain · aposymbioic hydra rep2	1	0	0.00	0.00
symbioic hydra M9 strain · symbioic hydra rep1	1	0	0.00	0.00
symbioic hydra M9 strain · symbioic hydra rep2	1	0	0.00	0.00
unannotated	1	0	0.00	0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study
SRR21134050	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134051	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134052	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134053	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134054	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134055	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134056	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134057	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134058	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134059	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134060	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134061	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134062	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134063	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134064	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134065	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134066	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134067	whole body	whole body	not recorded	not recorded	SRP392977
SRR10058802	Whole	Whole	not recorded	not recorded	SRP220397
SRR10058803	Whole	Whole	not recorded	not recorded	SRP220397
SRR10058804	Whole	Whole	not recorded	not recorded	SRP220397
SRR10058805	Whole	Whole	not recorded	not recorded	SRP220397
SRR10058806	Whole	Whole	not recorded	not recorded	SRP220397
SRR10058807	Whole	Whole	not recorded	not recorded	SRP220397
DRR048593	aposymbioic hydra M9 strain · aposymbioic hydra rep1	not recorded	not recorded	aposymbioic hydra rep1	DRP003902
DRR048594	aposymbioic hydra M9 strain · aposymbioic hydra rep2	not recorded	not recorded	aposymbioic hydra rep2	DRP003902
DRR048595	symbioic hydra M9 strain · symbioic hydra rep1	not recorded	not recorded	symbioic hydra rep1	DRP003902
DRR048596	symbioic hydra M9 strain · symbioic hydra rep2	not recorded	not recorded	symbioic hydra rep2	DRP003902
ERR13389755	unannotated	not recorded	not recorded	not recorded	ERP162636

Source: CnidoSite RNA-seq expression matrices (HVIRI_TPM, StringTie quantification over 29 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.