Gene detail

Detailed information of BRAKERKREP00000027491.1 in Hydra viridissima

Genomic Location: :...
NR annotation: XP_047140012.1, uncharacterized protein LOC105844265 isoform X1 [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

BRAKERKRET00000027491

ATGCCAAGAGCTTCAACCAATCCAATTTGGAATTATTTCACTCAGTCTGAGGAAACTGCTCCAGCACCTAAAACCAACAAACATGCAAAGCCAACTAAACTTGCTTCTTGCAATACTTGTAAGAAGACCATAAAAAGGAATGATGGAGCAACTTCTGGATTAATTACACACTTGAGaacttGTCATGAACACACCCAGTATTTGGCTTACTGCAAAGAATATGATTTGATTAAGAAAGAAGATGAAAGAAAGAGAGTAAGACAGGAGGAGGAAGCTGCTGAAAAGAATACTCAGTCTCAAAAAGGTGTAGTTAAAAGAAGTCAGTCTCAAGGCACTTTGGAGGACTACACAAGGAGCATCAAGTATTCTATGCAGAGCAAGCAGCAGTTAATGTTTGACTCCCAACTTGTGATTTTGCTAGCATctttaaatttgtcatttaatGTGGTTGAGAAGCCTGcttttaagaacttttgtCAACAATTTTTGCCCAAATATCAcatcaaaacaagaaaaacatttgcagAATCAAAGCTTAATAATGTTTATGAGAACTTACTGAAAAATGTCAATGAAGAGCTTAAATATgacctaaaaaatattcagatgGTTTGTTTCACTACTGATGGCTGGACCGCCCAAAATGGAGACCCATTTGTCTCCCTTAGTGTACACTATACAACAGAGGagtttgaattgaaaaaaattgctttggCTATTGAAAATTTCACAGACAAGAAAACTGCAGCAAACATTTCAGATGCATTTGACAGCATGATTGAACAATTCCCAGCATTGAATGGACAAAACCTGATCAGACAAGTGGTGACAGATGCAGCCAACACCATGAAATCTGCCATGACACAAGAAAGTGACAAAGTGCatgaacattttatttgcCTTGCCCACATCCTCAACACATGTCTCAAACATGCTTGCAAAGCATCTCCAGCAATTGATGCTGCCATTCAAAAATGTAAGGAACTAGCAAGGAAAACACATCAGAGCTTTAAGGATCACAAAGAAATTGTCAAGTActgtattgaaaaaaatgttaaagtaagAAAGATCATCCAATCATGTGAAACCAGGTGGAACTCAAATTGCATGATGTTGGACTCAATTATACAGATGAAAGATGGGCTGCTACATGCAAAGAGGTCATTGGGTACCTTTGCAGAAGGTCATTTCACCACCTTCATACCCACAGAAGATGAATTTGATGTGCTACATAAATTGACTAAGTTCCTCATGAAGGTAAAAACTAGTTCAGAAATGTTATCAGCTGATGAGAAACCAACTTTGCATcaagtgatttttttgttaacagcACTCAAAGACAACATTGATGCTGTGCTAGAAGAAATTGTTGGCATACAAAGGTATGTCCCCCTGGCTGTGTttcttgaaagttttaaaggaCACCTACTTCAAAGAGTGAGCAATTATGGAGCTGACAACCTAGCCTATGCCATTTGTTCACTGCTTCACCCACTGTTCAGAGGACACCATCTTGAAGTGGAAAGAAAAGTCTggaataaaacaacaaataactttGAAGGTACTGGTCAAAATTACAAAGATTACTGGCAGTCTTATTTCGTAAAAGGTCATCCCTCTACTCGTGAATGGAAGGAACAGAGAGATAAATCTCTTGAAGAAATGAGTGCAAGTGCTACAGACTTGGAGCTGGATGATTCACAAGACGATAATTTCCTTGGTAGCGCTCTAAAGAACTtccaaaaaagtcaaaaccCAACAACATCAAAGTCAAAAGGGCTAAGCGGTAAACCACCTTTGCAGCACgaatttgaaatgtttgaaTTATTGCCTAGAGATTGTGATCATAAGGTTGATCCTTTGATGTGGTGGAAAAATAAAGCAGACCTTCTACCAAAGCTTGCAAAATTGGCAAGGCATTGGCTATGCATTCCAGCCACCTCAGCCACCTCAGAAAGAATGTTTTCAACTGGTGGCAAAATTGTTACAGACACAAGACACAACATAGACCCAGAAACTACCAGCAAACTgttatttattaatgaaaattatcacAGGGTTGATGCAAACATTAATGAATGGGATCTTAAATGTGTGGAGGAAATACCTGCCTCTCAAGAAGAACAgagaaatcaaaataacaaaagacaAGCACCACCAAATTCACCAAATGCAAGTGTTACTATGAGCCCTCCTAAAAAAAGGGCTTTGTCTGAAgtcatgaagaaaaaaaagagacacAATCCAGACTACAGTGCATCAGCAGAATTAGTGGATGACCCAGACACTCCAACTCAATCTGCTGAGTCTCAATCTCAACCTGAATGTTCTCAATCTCAATCTATTTTGCAGAAATCCACTTCatcaaaaagaaagacaatggataaaaaaaaaatgaacagatCTAAAACATTTGACACAAGTAAAGATGAAGGGAAAAGGAGCATCCTTGATGCTttagatgatgatgattttattgatgatgatgatttgatttaa

Transcript

BRAKERKRET00000027491

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05699	Dimer_Tnp_hAT	hAT family C-terminal dimerisation region	Domain	Interproscan
PF02892	zf-BED	BED zinc finger	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR052717	Family	Vacuolar processing and transposase activity regulators	Interproscan
IPR008906	Domain	HAT, C-terminal dimerisation domain	Interproscan
IPR003656	Domain	Zinc finger, BED-type	Interproscan
IPR036236	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46169	DNA REPLICATION-RELATED ELEMENT FACTOR, ISOFORM A	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0046983	Molecular Function	protein dimerization activity	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K24637	ZBED1; zinc finger BED domain-containing protein 1 (E3 SUMO-protein ligase ZBED1)	EC:2.3.2.-	Ubiquitin system	ko04121	deepkoala