Detailed information of BRAKERKYLP00000000461.1 in Mastigias papua

Genomic Location: :...
NR annotation: XP_020630185.1, probable E3 ubiquitin-protein ligase makorin-1 isoform X3 [Orbicella faveolata]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
Q5NU14Probable E3 ubiquitin-protein ligase makorin-1 OS=Takifugu rubripes OX=31033 GN=mkrn1 PE=2 SV=1
Q6GLT5Probable E3 ubiquitin-protein ligase makorin-1 OS=Xenopus laevis OX=8355 GN=mkrn1 PE=2 SV=1
Q9QXP6E3 ubiquitin-protein ligase makorin-1 OS=Mus musculus OX=10090 GN=Mkrn1 PE=1 SV=1
Gene familySubfamily
Ubiquitin FamilyE3|E3 activity RING|RING

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF18044zf-CCCH_4CCCH-type zinc fingerDomainInterproscan
PF18704Chromo_2Chromatin organization modifier domain 2DomainInterproscan
PF00867XPG_IXPG I-regionFamilyInterproscan
PF00752XPG_NXPG N-terminal domainFamilyInterproscan
PF13639zf-RING_2Ring finger domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR008918Conserved_siteHelix-hairpin-helix motif, class 2Interproscan
IPR001841DomainZinc finger, RING-typeInterproscan
IPR000571DomainZinc finger, CCCH-typeInterproscan
IPR036855Homologous_superfamilyZinc finger, CCCH-type superfamilyInterproscan
IPR006085DomainXPG, N-terminalInterproscan
IPR041367DomainE3 ligase, CCCH-type zinc fingerInterproscan
IPR006084FamilyXPG/Rad2 endonucleaseInterproscan
IPR041012DomainFlap endonuclease GEN, chromatin organization modifier domainInterproscan
IPR006086DomainXPG-I domainInterproscan
IPR036279Homologous_superfamily5'-3' exonuclease, C-terminal domain superfamilyInterproscan
IPR029060Homologous_superfamilyPIN-like domain superfamilyInterproscan
IPR017907Conserved_siteZinc finger, RING-type, conserved siteInterproscan
IPR013083Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR045072FamilyMKRN-likeInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11224MAKORIN-RELATEDInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0003824Molecular Functioncatalytic activityInterproscan
GO:0046872Molecular Functionmetal ion bindingInterproscan
GO:0004518Molecular Functionnuclease activityInterproscan
GO:0000209Biological Processprotein polyubiquitinationInterproscan
GO:0016567Biological Processprotein ubiquitinationInterproscan
GO:0061630Molecular Functionubiquitin protein ligase activityInterproscan

TOP