Gene detail

Detailed information of BRAKERKYLP00000001130.1 in Mastigias papua

Genomic Location: not available for this species
NR annotation: XP_047143761.1, gem-associated protein 5 isoform X2 [Hydra vulgaris]
Species Mastigias papua · all data for this species · gene families

Sequence

CDS

BRAKERKYLT00000001130

ATGGAACAAGGTTACTTAGACAACGAGGCACACAAAGAGTCGCTCAGACCAAACAGGTTGAAGATGTTGGCGACTAACGAAAAGATACAAACTGTGCCTCTGTTTGAGATTGCAGACACTCAGAAGACTAAACTGACGGACAAAATGGGTAAGCTTGTAGTTCAATTGTACAATGATGCCAAGTGCTTATCCTTTTCATCCCACTCTTGGCCATCAAGAGTTGTTGCAAGCGAGATTGCTCAtcagtttgatttcaaatcacCTTTTCAATCATATGATGCATCTTTCCTTGATCTTCAGTACGTTACACCTGGGAGCTATGAAGACATCTTAAGAATGGTAATTGCTTTTAATGCACCAAGAATAATCAAAGTGGTCGATAAGTGCCTAGCAGTTCAATTAACGAACGGAAAATGTCTGCAATATCCTTTGTTGAAGTCGGTATCTGCAGTTCATTCATGGGCATTGGCTTTTAAAGCTCTTTGTAAAGAAGTGACCAAAGTAGATGTATTGGAGGAACAAGTCGATGGAAAAATGCTGACCAAGAAAGGCAGCCTGCAGTTCATGTGCATTCTTGATGGCTTATTCATTGCTTCTGGGTCAAAAGACAAAACAATACGAGTTTGGGACATAGAGAAAGATAACCCAGTACTCACTCTCAACATCCCGGGTAAAACCTTAGCCTACAAAGGAAGGCGAAAAATTGATGAGATGAATCGTGCTAAACTTTGGATCACCTTATGCTGGCACAAGAAGGACACTTTGGTTTCAAGCAGTAACAGTGGCGAACTCCTTATTTGGGATCTGAAAACAAAGAGTTCTAAGTGCATTAGTCCTGCGCACAGTCGCATCGTATTCAATATTTCATATGACCATACAGCAATGAAGATTGTAACAACGTCAATGGACAGACAGATCATGTTTTGGGATGCAGAAACATACGAATTATTGACTTCCATGCCAAGCCTTGGTGGATATATATACTCAATAACTGCTTCATACCTCGACCCTTACCGCATCATTTATGGTGTTGGTGATAACCTCATACGTGTATGGAATACACGAATTGACGACAAACCCTATGAAACCAGTCTGATCTGGCAAGGGATTAAGTCTAAAGTTACTGTCGTTGAATGCCATCCTACTAAAGAGAGCGTTATTGGATTCGGTACTGATGATGGGCATGTTGGAGTTTATAACATATCCTCGGGAAAATACCAAGTTTCAGTATCCCACCACAGAAAGACCGTCTATTCATTATCTTGGGGACCTCACTGTAATGACGAGGCTGATAGTAGTTCACTTAATGGGAACTGGTTATACAGTTGTGGTGGAGAAGGGAGCGTTCTAGCGCACGCGATGAATGATTTGCAGAATAAGGCAAATGATGTCAATACATTGATCAAAAAGACGAATTCTATGCAAGAAAAGATGCCGAGTAGAAGTGATGTAGAGTGGAAAAGAGACTTCAAATATCTTGCTATAGGAAACGATGACGGCTCTGTTGAGATCTTCTCAAGTTCAATGCTGCAAAAAATTTGCACGATCTTGGTTCACCGAAAGATCATCAATTGTATGAAATGGCACCATCATTTTGAAAGCCTTGAAGACATGACAGGTAGCGCATTCTCAAGTTGGTTGGCAACAGGTTCAAGTGATAACTGCGTATGTGTTACGGATCTTTCATCGGTTTTTGAAAGGAACATCACAGATAAACAAGTAACAATCGTCAAGGAGAAATTCCGCCATTTCAACATGCATTCTCAACGAATAACATGTTTGTCATGGTCTCCCCATTCCATGGGGCTGCTTGCTTCGTCAAGTTACGATGGGTCTGTCCAGaTCTGGAATGTCATCAAGAACGAACCAGTTGCGAATTTTCATAGCCACAGTGGCCGTGTTCTTTGTGTTCTTTGGAGCCTTCTCAATCCTGACATTGTCTTTTCTGGAGCAGAAGATTTTACCCTACGGAAATGGGCGGTGTCTGCTTGCAAGCATAAACTGCCTTCAGAGATGAAAAAGTCAAGTTCTCAAAAAGGCAATTCAGAGAAGAAAGTTAGGCTTACTTCGCCAACCCctaaagaagaagatgaagtgtCAAAAGGAACCCAACGAAGAGAATTAGATGAGGAAGGTTTCAGTGTTTCAATACAGTCTTTAAATGATTCTGTTACTTCTAAGTTATCGAATTCAGGAGAGCATGACAGAAAAACTGATGAAACAAATCAATCAAAAGCTAAGAGTGATTCAGTGATTAAACGGATACCCACCAAAGGTGAGCTGAAGAAGAAAAAGGCAAAATCCCTACTTCCGTTGTCTTCGAGTCAAAATCACAAGCAAAAGTCAGCGAGCCAAAAGGAATGTATTCTCCTCGCCCAATACCTTAAAGATAAGTCGAGTCTTCCTGTTAGTGCCGATGAATTTGAACCTGGTACAAATGAATTTGTTAACCTTGGTCTTTTTGGTGATAGGGTTTCTgcttttaaaatgttttcttCTGAAGGACAAAACCATGAGAACTCTGGAAATATTGAGCAACAGCTGCACCTTGAGTTGTGGAAAGGTAACTTAGGAGGTGCGCTGCAAACTTGCAAGGAAAATGGAGAGTTGAATGCGATGGTTGTTGCAATGAGTCCTCTAGGTGGGTATGATGTGTGGCAGGCGACAATGCAAGCGTATGGCAATCAGCTTGCAGCGAAAGGTGATTACGTCACAGCTGCGACATACTTCGTGGCTATAAACAAAGTCAAAGACGCAATTGAAATGTTCAAAGCGCAGAATATGTTCAAGGAAGCAATTTCATTGGCAAAAGTGAGATTACCTAGCAATGACCCGATCTTGATTGAATTATATCAACTTTGGGGTGATCGACAAAGTGCAGAAGGCTGTAATGAACACGCTGCCAAATGTTACATAGCATCAGGAGACCACAACACAGCCATAAAGACCCTTGCAAGAAAGGGGGATATCAACTCACTGAAAACTGCAGCAAAGGTTGCTTTGGTTTATGAAGAAAGCGAAATTGCTAATGACTATTTGAGACAATGCGCAAAGATTTCTTTAACTGATTTCAATTGGAAGGGACTCAAAGAGATGGCAAGCATGATGGAACCTGTCGTGGTTGTTGTAGTTCTTATGGTTGTTGTGGCTGCTTTGGTTGTTGTGGCTGTTGTCGTTGTTGTGCCTGAGCAGATGCTTCACTTGTGGTCAGGAGCACTTTCATTTAGACCAGAATCTTTGGCTTTATGTCCTGTTGTCAACGAGGGTATTGTCCTGCAAGCTGTTACCCATGAATTGCTGGCTCATTGTTTTGCTGGAACAGAATTTGGCCAAGCTTTGAATCTAGAACTTCACACAGTTAAAAACGGATGCTACATTAATAAATCAGCCTTACAAGATACGGGGGATGTTGAAGGAAGCTCCGAGTATGTAATGGAATCAATTCGATTTCTTCAAGTAGTCGCTGGCGCTTTCAATAGAGAACTTGGAGCAAGCCCCTCGTcagaaattttaaaaaatagaGATCTTCTTGAAATGAAGACCGATGATATCAACCTAAGCAGCGCGTTCCTGGCTATTTCCTTTGAAATAACAAAAGGAATCATCAACTTGCTTGAGCACGATATCAAAGGTTATTTCATCCATATGCTTTTTGCTATGGACATTCTGCATCGTACTTACCAATTAGAAGCTCTTGAAATCCTTTACAGACTGTTGTTTCCAAGAGATTTTGTCACCTTTGAACAATTGCTTAGACGATCTTTGTCTGATGTTGACAAAACTGCGATTCTACAGTGTTTTCATAATTTCCATGCTTACTTCAAGACTTCGGTTTTATTCCAATTTTGGTGGAAAAGATTCCCTTATATCGTAATGAAAAATCGTGGAGATGTGTGTGGTGATTATGAGAGTGTTGTTAAGGAGAACATTTGTGTGCATGAGATGTTGCCTATTTCTATTGAGTCAGAATTTCTTAAAATCCAAAGTGCAAACCTGGTCACCTTAATTGGAGGCATGGCAACGTATATTTTGTCAAGTTTGCATTGCAAACTCTCGCAACTGAGAATTCACGTTAAGAAGATGGAGCAAGATATCTTAGAATTGAGAATAAAGAAACAATTGAGAATGCATATTATGAGCAAGAAAGATGAAAACAAAACTAGAAAACAGTCAGCACTTAACATATCTTCGAAGAATATTGAAGTAAAAAAGTTATCAGCATCAAGTGATGATAACTGGCGAAGGAAGGAAGCAACCAACGTgaaaaatgaagatgatgggAGCAGAAAGGAGGCAGAAACTGAAGATATTGAATATAAGAAGATGCCTTGCTTAAGCGAAGATGAGTCGAATATAAGCAAGGAGGCTTGCTTGGTGGAAAGAGACATGGAATTAATTGATGATACAAGTGTACAATTAATGCAAAAGTGCTTTGAAGAAATGAAGGTGGAGTTAGAAAAGTTAACGGTACTAATTCCGTTCCATTGTTTTCCAAATGGCTTGGAGAATGCAAAGATTTTGTTGCATATTATCTGGTGCTCTTTGAAGACTGGAGTTTTATCGGACGTTAGAGACGTAACAAAGCTATTTGGTATTGCTGATGATATAATTAATTGGGGACTTCAATGCTCTTCACTTTCTGATGAAAAGCAGAGTTTTGATCGATTTAGAACAAAGCTGCAAGTACTTAGAAGTTAG

Transcript

BRAKERKYLT00000001130

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8TEQ6	Gem-associated protein 5 OS=Homo sapiens OX=9606 GN=GEMIN5 PE=1 SV=3
Q8BX17	Gem-associated protein 5 OS=Mus musculus OX=10090 GN=Gemin5 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003885 (this species only)
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|CDC20 · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR052640 all species →	Family	WD repeat domain-containing protein Gemin-5	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR011047 all species →	Homologous_superfamily	Quinoprotein alcohol dehydrogenase-like superfamily	Interproscan
IPR019775 all species →	Conserved_site	WD40 repeat, conserved site	Interproscan
IPR020472 all species →	Repeat	G-protein beta WD-40 repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46362 all species →	GEM-ASSOCIATED PROTEIN 5	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0000387 all species →	Biological Process	spliceosomal snRNP assembly	Interproscan
GO:0003730 all species →	Molecular Function	mRNA 3'-UTR binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0032797 all species →	Cellular Component	SMN complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13133	GEMIN5; gem associated protein 5	-	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.