Genomic Location: chr1:6871819...6878640
NR annotation: XP_002165747.1, V-type proton ATPase 16 kDa proteolipid subunit c [Hydra vulgaris]
Species Mastigias papua · all data for this species · gene families
| CDS |
| BRAKERKYLT00000001286 |
| Transcript |
| BRAKERKYLT00000001286 |
| Protein |
| BRAKERKYLP00000001286.1 |
| UniProt accession | Description |
|---|---|
| P63082 | V-type proton ATPase 16 kDa proteolipid subunit c OS=Mus musculus OX=10090 GN=Atp6v0c PE=1 SV=1 |
| P63081 | V-type proton ATPase 16 kDa proteolipid subunit c OS=Rattus norvegicus OX=10116 GN=Atp6v0c PE=1 SV=1 |
| Q03105 | V-type proton ATPase 16 kDa proteolipid subunit c OS=Torpedo marmorata OX=7788 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0007626 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00137 all species → | ATP-synt_C | ATP synthase subunit C | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR000245 all species → | Family | V-ATPase proteolipid subunit | Interproscan |
| IPR011555 all species → | Family | V-ATPase proteolipid subunit C, eukaryotic | Interproscan |
| IPR035921 all species → | Homologous_superfamily | F/V-ATP synthase subunit C superfamily | Interproscan |
| IPR002379 all species → | Domain | V-ATPase proteolipid subunit C-like domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR10263 all species → | V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0033179 all species → | Cellular Component | proton-transporting V-type ATPase, V0 domain | Interproscan |
| GO:0046961 all species → | Molecular Function | proton-transporting ATPase activity, rotational mechanism | Interproscan |
| GO:1902600 all species → | Biological Process | proton transmembrane transport | Interproscan |
| GO:0016021 all species → | Cellular Component | membrane | Interproscan |
| GO:0015078 all species → | Molecular Function | proton transmembrane transporter activity | Interproscan |
| GO:0033177 all species → | Cellular Component | proton-transporting two-sector ATPase complex, proton-transporting domain | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K02155 | ATPeV0C, ATP6L; V-type H+-transporting ATPase 16kDa proteolipid subunit | - | Rheumatoid arthritis | ko05323 | deepkoala |
Genes whose expression across the transcriptome samples of Mastigias papua tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Mastigias papua, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
