Gene detail

Detailed information of BRAKERKYLP00000003200.1 in Mastigias papua

Genomic Location: not available for this species
NR annotation: XP_002165851.1, uncharacterized protein LOC100198679 isoform X1 [Hydra vulgaris]
Species Mastigias papua · all data for this species · gene families

Sequence

CDS

BRAKERKYLT00000003200

ATGGCGGATACTACGATCAAAAAGTGCACACTTGATGTTTATGTTAAGGATACTCGCCTAGAGGAAGTCGAACAGAAATTCGATCGCATTAGAGATCTCTTTAATGTTGAGTTAAAATATGGATATTCGCAAGGCAAACAGTACATGGTGAACCCTGGAAAGTGGCTAGAAGTAATCGGGACAAGGGAAAATGCGGTGAAAGCGCGGGAATATGTTAAAGGTATCTCAAATCCCGAAGAAATTGTTCGTTTGCGAATTCCTGGTTCCCTACTAGCTGATAGAATTTCGGCGAAGGTTGACGATTTGGAGAAAGAAACTGCGGCTATCATTTCGTTTAAAAACAACGAAGAGGTTGTTGAAATAACTGGATGGATCAATGGGGTAACCAAGGCTGCTATGAACATAGAGAATACCATTACTCTGTTTATTGAAGAGCAGAACGTAACAGGAACTGACCTCTGCCAGGACACAACACATGATGGGCAAACTGCAGGAATCTCAATCGATTCGGATAATCACAGCCTCAATACAAGCAATGAGGGTGTTTTGTTTAACAACTCAATTCCTGCGTCGTATTTTTGTAATGGAATCGCTCTGGTTGAGGAAAGAAATGGCCACAATTGTATAACAAATGTGGAACAAAACCCATATGGTTCTTTAACTGACTTCTCGAAGCAGGGCTATTGTTTTTGCAACAATAATGATAGTAACAGAAAACCTTGTGCGAGTTGCGATGTGGAGATCCAAAAGGAGGGAAATTGCTCATTTAGTCCAAACTCAGAACCGACGTTAACTGCAGATTTGATGGAATTTGGGTTGAAATTGGGATATCGTGAGGATGAGGTGAAATCCGCCATGAAGAAGCTTGGCACTGAAACGGCTGTAAACCAGAATGAGTTACTCCATGAACTGATCAAAGCATCTACATCGGCAAAACAGATTGGGAAAGCAGAAGAATGCAAAGTGGAGAACTCAACAGGATATCCCAAGCCTGCCGATTCAAGCATTCTTAGACATGTTGTCATCGATGGAAGTAATGTGGCCATGAGCCATGGTAAAAATGCGGTGTTCTCGTGCCGTGGAATTGCTATTGCCGTTGACTGGTTCCGGAAACGAGGCCACCGAGTTAGTGTTTTCGTGCCGAATTGGAGAAAGGAAGCATCGAAGCCAGACACACCTATAATTGATCAGGAAATATTGGCTCAACTAGAGAAAGATGGAGTCCTCAGTTATACTCCCTCAAGACGGATTCAAGGCAAACTTGTGCAGTGTTACGATGACCGATTCATTGTGAAACTGGCTCTCGAAACTGACGGTGTCATTGTATCAAATGACAATTTCCGGGATCTCCAAGAAGATGTCCCAGATTGGAAGAACTTTATTGAACGTCGGTTACTGATGTACACGTTCGCAAATGAAGACATTTTCATGCCCCCGGATGATCCCCTCGGCCGTCACGGACCGTCCCTCGAAGAGTTCTTGAGAACCACTGGCGAGTATAAGTTACGCCAGTGTCCATACGGCCGAAAGTGCACATTTGGACACAAATGCCGCTTTTATCATCCGGAGCGAAGCTCGCATTCTATTGCGTTGAAATGCAAACCGTTTCCTTTCcatcagcaacagcagcagcagctaCAAGGGGCTTCACGTCCCAGATCAGATCCATGTCAGACAAATGTGCACGGGATTCAAGATGGCAACCGACGCCCCATTAGTCTGCCAAATCTCGAAAACCTGTGGATAAGCAGTCCACCAACGTCTTATGTTCCAGTTGGCACTATTCCAACTCAGACTGTTCAAGGGCGGCCAGTGTCTGGGCCTCCTTTTCAAGAGGGACAGTATGGACAAAATGAACCACAGATACCACGTGTATGCTCTTCGGGAGATATGATGCAAGCTTCGGCAAATATTGCCCGAAGATTAAGTGGCGAATTCCCGCATTTTTCACCACAGCAAGGTGGTCAATACATGCAAGGGGTTGTCTTAAATAGGCCTAGACCGCCTTCTGGTGGAGACTACATTGGAAGACCCCTGTCATCGGATTTCAGTAGCCGGCCGGCCTCGGAAGACTTTAGCTATTGTAGTGGAAATAGTAGACCCGCTTCGGGTGAGTTCAACTCTAGCAGACCGAACTCCGGTGATTATAGCGCTAGTCCTTGGAGCGGTTTAGGTTACCAAAGAACAGTTTCATTTGCCCCCAATGTCCAAGGGAATCAAATTCCATATTTTGATACGAGAAACTTCTACCCTGTTAAAGGGTATTACAAGAACAGAGGACCACCAATGCCTGAGACGAAAGAAGAAACCCGCATACCGAATGGTCTTACACGGATGGACCTGCTCGACAAATTGCGTGAAATGTTCCCAAGCCATAATTTCGACAAGATACTGGCCATACTGCGAAACCACCCGGATATTTCAAGCGTGGAGGATGCTCAGAATTATATACTCAATGAATAG

Transcript

BRAKERKYLT00000003200

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A6QQJ8	Ribonuclease ZC3H12A OS=Bos taurus OX=9913 GN=ZC3H12A PE=2 SV=1
Q9C0D7	Probable ribonuclease ZC3H12C OS=Homo sapiens OX=9606 GN=ZC3H12C PE=1 SV=2
Q5HYM0	Probable ribonuclease ZC3H12B OS=Homo sapiens OX=9606 GN=ZC3H12B PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001621 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF18039 all species →	UBA_6	UBA-like domain	Domain	Interproscan
PF11977 all species →	RNase_Zc3h12a	Zc3h12a-like Ribonuclease NYN domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036612 all species →	Homologous_superfamily	K Homology domain, type 1 superfamily	Interproscan
IPR000571 all species →	Domain	Zinc finger, CCCH-type	Interproscan
IPR040546 all species →	Domain	Rege-1, UBA-like domain	Interproscan
IPR021869 all species →	Domain	Ribonuclease Zc3h12a-like, NYN domain	Interproscan
IPR003892 all species →	Domain	Ubiquitin system component CUE	Interproscan
IPR051101 all species →	Family	ZC3H12/N4BP1 Ribonuclease and Regulator	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12876 all species →	N4BP1-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan
GO:0043130 all species →	Molecular Function	ubiquitin binding	Interproscan
GO:0003729 all species →	Molecular Function	mRNA binding	Interproscan
GO:0004521 all species →	Molecular Function	RNA endonuclease activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0036464 all species →	Cellular Component	cytoplasmic ribonucleoprotein granule	Interproscan
GO:0090502 all species →	Biological Process	obsolete RNA phosphodiester bond hydrolysis, endonucleolytic	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K18668	ZC3H12, MCPIP; ribonuclease ZC3H12	EC:3.1.-.-	Messenger RNA biogenesis	ko03019	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.