Gene detail

Detailed information of BRAKERKYLP00000003956.1 in Mastigias papua

Genomic Location: not available for this species
NR annotation: XP_012554034.1, F-box only protein 11 isoform X3 [Hydra vulgaris]
Species abbreviation MPAPU · all data for this species · gene families

Sequence

CDS

BRAKERKYLT00000003956

ATGGAATTCGATAAATTTACAGAATGTTATCATCCTTTTGTATCAGGGACAAAGTTGGTAAGCGTCGAGTCACCCGGTGCTGCTAAAAACAAGCGAGCAAGGATCGAACAGTATATGGAGATGGCAGATGAAATGAGTGGCTGTTCAAACATCATAAAATTCCGAGGATCACGAAAGAAACAGATTCCGCCAGGCTATGTTCAGAAGATGTTGCCCGATGAAGTCCTACTGAAGCTGCTATCTTTTTGTCCTCCAACTGAACTCTGCAGGCTGTCTATGACATGCAAAAGACTACAGGCCCTGTGCAGAGATGACTCGTTATGGAAAAATCTATACACAAGGGTTTACAGAATGCGGAAACCTTTGGTTAGGGGAAGTAATGGATTGTATGAGAATTCTGATAAAGGGCTTTTTCCTGGTTTGACGTGGAGAGGGGCATTTCCCTTGCTGTCTAAAGCCTACCACGTGACAAAAGACGGAAAACTGGCCAATGACCTAACATATCTAAACAGAAAGTGCTTTTCGACAATCAAAGAAGCCATCTCCGAAGCACCTTCAGGTTCAACGATTCTGGTACATCCAGGAACTTATACAGAAGAGAACTCCTTGGAAAGTAAAGTAACAATAATTGGAACAGAAAATTCAGACACAGATGAATACCCAACGATTCAATGTTCTACTGGAAGTATATTTAGGATCCGTCCGACGGCAAGTGGCTCACAACTGGCGTTTCTTCGCCTAGAGGTAACAGCGCAGGAAACAGGAACCCACGCAAGAGGACATTGTGTCGAAGTTTGTAACGATTGTACACCAACCATACAAAATTGTTTCATCACAAGCAAAAATTCAAGCTCTTCGGCTGTATTTGTGCATGGCGACGGAGGAAAACCCAAAGTCGTAAAATGCAAAATAACAGAGTGCGAAAATGTTGGAATATTCGTCACAGACGGCGCACAGGGCACTTACGAGGAGAATGAAATTTTCAACAATAGACTTGCCGGTTTCTGGGTGAAGGGTGGTGCAAATCCGGTTGTTAAACGGAATCTTATTCACCATGGAAGAGATGCCGGCCTTTTCATTTTTGATGGTGGTTTGGGATACTTTGAGGAAAACAGTGTATACAGCAATAGAATAGCTGGATTCGAAATCAGATCAGGGGCAAATCCGACCGTAGTCAGATGTCAGATTTATGGGGGATCGACAGGAGGCGTTTACGTCCACGATGATGGACGGGGAGAGTTCATTGGCAACAAAATTCACTCGAACACCTTTGCTGGGGTTTGGATCACGTCTGGGAGTAACCCCACGATAAAAGATAATGAGATATATCATGGACACCAAGGAGGTATATATGTATTTGGAGATGGACGAGGATTGATTGAGAATAATGATATTCATGGCAACGCTCTGGCTGGCATTCAAATACGTTCGAACAGTAACCCGATTGTGAGGCGAAACAGGATTCACCATGGCCTGCACGGAGGCATATATGTTCACGAAGGTGGACTCGGTCTCATCGAAGACAACGAAATTTATTCGAATACACTGGCTGGTGTGTGGATAACAACAGGGAGCTCGCCGATACTGAGACATAATCGAATTCACAGTGGAAAGCAGGTTGGAGTTTATTTCTATGACAAAGGGTGTGGGACATTGGAAGACAACGAAATTTACAACCACAAATATTCCGGAATCCAGATCAGGAGTGGCAGCAACCCTGTGATACGACGAAACAAAATATGGGGCGGCAAAAATGGTGGCGTTCTGATCTACAATGGTGGTTTGGGCATTATCGAGGACAATGAGATATTTGACAATGCGATGGCGGGCGTATGGATAAAAACAGAGAGCAACCCTATTCTGCGAAGGAATAAAATTCATGATGGACACGAAGGAGGAATTTGTATATTTAATAATGGAAAAGGCTTGCTCGAGGATAATGACATTTTTAGGAACGCACTTACTGGTGTTTTAATAAGTACATCGAGTTTCCCTGTTTTAAGAAGAAATCGAATATTTGAAGGAGGCGCTGCTGGGatagaaataacaaataatGCAGGAGGTGTACTGGAAAAAAATGAGATATTTAACAATAGATTTGATGGCATCAGTCTTGCTACGGGAGTCTTACCGAAGATGATTGGTACGTAA

Transcript

BRAKERKYLT00000003956

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q7TSL3	F-box only protein 11 OS=Rattus norvegicus OX=10116 GN=Fbxo11 PE=2 SV=1
Q86XK2	F-box only protein 11 OS=Homo sapiens OX=9606 GN=FBXO11 PE=1 SV=3
Q7TPD1	F-box only protein 11 OS=Mus musculus OX=10090 GN=Fbxo11 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003937 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12937 all species →	F-box-like	F-box-like	Domain	Interproscan
PF13229 all species →	Beta_helix	Right handed beta helix region	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006633 all species →	Domain	Carbohydrate-binding/sugar hydrolysis domain	Interproscan
IPR012334 all species →	Homologous_superfamily	Pectin lyase fold	Interproscan
IPR011050 all species →	Homologous_superfamily	Pectin lyase fold/virulence factor	Interproscan
IPR001810 all species →	Domain	F-box domain	Interproscan
IPR051550 all species →	Family	SCF Complex Subunits and Alginate Epimerases	Interproscan
IPR039448 all species →	Domain	Right handed beta helix domain	Interproscan
IPR022441 all species →	Repeat	Parallel beta-helix repeat-2	Interproscan
IPR036047 all species →	Homologous_superfamily	F-box-like domain superfamily	Interproscan
IPR006626 all species →	Repeat	Parallel beta-helix repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22990 all species →	F-BOX ONLY PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0006511 all species →	Biological Process	ubiquitin-dependent protein catabolic process	Interproscan
GO:0042981 all species →	Biological Process	regulation of apoptotic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10297	FBXO11; F-box protein 11	-	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.