Gene detail

Detailed information of BRAKERKYLP00000004016.1 in Mastigias papua

Genomic Location: not available for this species
NR annotation: XP_047138774.1, protein farnesyltransferase subunit beta isoform X1 [Hydra vulgaris]
Species Mastigias papua · all data for this species · gene families

Sequence

CDS

BRAKERKYLT00000004016

ATGTGCACGAAAGATAACAGGCCTAGTGGAGGGAAGGATAGCTGTTACAATCTAATTGAATGTGTACGAGAAGGCCATATTATTGTAGCACTTGCAAACCTAAAGCCCATAGAAAAAGATGAGCTGGATAGTTTTATGTATCAAACTGTTGGGCATGATGTCATCAACCTATATGCTGAGGCTGTTGGTTTGCCATTATTCAGAAAAGTGATCACTGGAAAATCTATTAACACTGAGCTTAACTATGAATGTAATGAGGATGATGAAGTGGAAGATCTCAGTAAACTGCTTAAAGATGTCCAGGGAAAAATTGCATTTGAAGCAGTTGCTGTTGGTGCAATATTATCTGACTACCAAAGAATAAGAGTTGAAAATGTGTGTTCAAGACTTAATATAAAGTGTCTTGCCTACCTTTGGCAAAGGGAACAAGATGAACTCCTGCAAGATATGATTGACAGTCAAGTTCATGCAGTTTTAATCAAAGTTGCAACTCTAGGCTTGCTCCCGCAAAAGCATTTGATGTCAACTATTGAGCAAATGCAAGGTCACCTTCAAGATATGAACATGAAGTATGGAATAAATGTCTGTGGCGAAGGAGGTGAATATGAGACAATGACGTTGGATTGTCCGCTGTTTTCGAAAAAAGTCGTCATAGACAAATACGAGACGATAATGCATTCAGATGACGCCTTTGCACCAGTTGGCTATGTGAAATTCACGTCAATGCACTTGGAAGAGAAAGGAATCGATCCAAATATATCCCTCAAAGAAAGACTTGATCTATACAATTTCCCTTCAAGGCTCTCAGAGAAAGTGGAATATCGTGTATCTGTTAGGGAAAATGTGGAGGAGCTAAACTGCAGTGCTAATAAGGTTGTGCAGCGTGTGAAACAACAGACCTTTGCGGACTACAAGAAACCTATAATATCAAAACATGGAAATGAGGTTTACATAACTGGGATTGTTTGTGGTATAAATATCGATGGAGATATTCTGACTTCGGCTCGAAAAACCTTCGGAAATTTAAAGGAAATCCTGAAACAATATGGTTGCCGTTTGCAAGATTGTATTCGTTTGCACCTGTATTTGAGAGATATGGAGTTGTTTGCTGTGGTTAACGAAGTTTATAAAGAATTTTTTAAACAAAATCCCCCAACAAGAGTTTGTGTTGAAGTATCTATGCCAGAAAATTACGTGTTTTGTCTTGAATGCCAAGCAGTTGATACCAAGTCTGAGGCTGAATGCACTGATGCACGGGAACTCAAGACCCTTCATGTGCAGAGCATCTCACATTGGGCACCTGCTAATATCGGCCCATACAGTCAAGCGAAAAAGATTGGATCTTCAATATTTGTATCAGGATCAATAGGTCTGGATGCTGGCTCGATGCGACTTACTCCTGGTGGAGTCTTGTCCCAGGCCCAGTTGGCATTTAGACATGTCGACAGAGTCATTAAGGCCATTGGTACATCGTGTTGCTTGAGAGACGCAATGCTTGTGATTTGTTACATTGTTGTACCAGATCATACGTCATTGGTTGAGGATATGTTCAATGAAAGCTTTACTTCGCTTTTGACACTACCATACGAAATGCAAAGATCATGTCTAGATGTTGCTATTGTTCCTGCAGGCGTACTGGATTTTTGTCCCTTTCAATTGATGTGTCTTCAAGTTTTAAGACCAAATGAAAGAGCCATACTGATAATACGTACATTAGCTAATGAATTATTTTACCGTGAGCTTCGGCTGATTCTCAAAAACGATTCTAAAGTTTTTCTTATAGGAAAGGGGGATTCCCTGAAAATGGCGGCTTTATCAGGCGTGATCGCAGGCCTCACTGAAAAGTTGCAAGTTACAGATGATGGATGTGAAACGGAAACGTCTAAGATCCAGAAAGAAGTTGAAGAATCACTTCTGAAGTGCTATAGAGTTTTCAATGGTGCACAAGATTTAGAACACAGCATTGTCCTTCTCAAGGAAAAGCATATAGAGTACCTAAGAATAGGGTTACAAAGGTTATCTAGAGGATATGAGTTCCTAGATGCTAGCAGAGCCTGGGTGTGCTATTGGATTTTGCATTCATTAGAGCTACTTGATATTCCAATTCCTTGTGAAGATGCTAAGAAGGTTGCTCATTTCCTTGACAAATGCCAAGACAGTCATGGTGGTTTTGGAGGTGCACCAGGACAAATGCCACATTTGGCTCCAACTTATGCTGCTGTTTGCTCATTATGTATACTTGGCAGATATTGGGAAGGAGCTTATGATATAATTAATAGGAAAGGATTGAGAAGTTTTATCAGATACAGAAGAACACCAGATGGCTCATTCACAATGCATAGAGATGGGGAGGTTGATATAAGAGGAGCATACTGTGCAGTTGTCGTGGCAAGGCTGACGAACATCGCAGATGGCTTATTCGAAAAGACTGGCGATTGGTTAGCACGATGCCAAACTTATGAAGGCGGATTTGCTGGCCTGCCAGAGTTGGAAGCTCACGGTGGATACTCATTTTGTGGTTTGGCTGCCCTAGCACTGCTTGGTTGtgaacagaaaataaatattgGGAAGCTATTGCATTGGGCTGCAAATCGTCAAATGCGACTTGAGGGTGGATTTCAGGGAAGGACAAATAAACTAGTTGATGGATGTTACTCCTTGTGGCAAGGTGGAATCTTTCCAATTCTACATAGTATATTGCAAATGTATGGGGACGATCAGTTGAGTCAGAAGGAATGGATGTTCGATCAGAGTGCACTACAGCAGTATATTTTGCTTGGTTGTCAACATTCTAATGGTGGATTGATAGACAAACCTGGAAGGCCACGTGATTATTACCACACATGTTATTGTTTAAGTGGTCTTTCAGTTGCCCAGAACTTTATTGGCGATGAAGTAGGCAATTTAAAAGTTCTGGGCCCAAAGAAGAACCATTTGAAGCCAACACACCCAACATACAATATTTGCATAGACAGTGCGTACGAAACTCTCGAATATTTCAATAAGAGACCACTAGATGACAGTCAATGA

Transcript

BRAKERKYLT00000004016

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P49356	Protein farnesyltransferase subunit beta OS=Homo sapiens OX=9606 GN=FNTB PE=1 SV=1
P49355	Protein farnesyltransferase subunit beta OS=Bos taurus OX=9913 GN=FNTB PE=2 SV=1
Q02293	Protein farnesyltransferase subunit beta OS=Rattus norvegicus OX=10116 GN=Fntb PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006937 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00432 all species →	Prenyltrans	Prenyltransferase and squalene oxidase repeat	Repeat	Interproscan
PF01902 all species →	Diphthami_syn_2	Diphthamide synthase	Family	Interproscan
PF01042 all species →	Ribonuc_L-PSP	Endoribonuclease L-PSP	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001330 all species →	Repeat	PFTB repeat	Interproscan
IPR035959 all species →	Homologous_superfamily	RutC-like superfamily	Interproscan
IPR008930 all species →	Homologous_superfamily	Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid	Interproscan
IPR030662 all species →	Family	Diphthine--ammonia ligase/Uncharacterised protein MJ0570	Interproscan
IPR002761 all species →	Domain	Diphthamide synthase domain	Interproscan
IPR006175 all species →	Family	YjgF/YER057c/UK114 family	Interproscan
IPR014729 all species →	Homologous_superfamily	Rossmann-like alpha/beta/alpha sandwich fold	Interproscan
IPR026872 all species →	Family	Protein farnesyltransferase subunit beta	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12196 all species →	DOMAIN OF UNKNOWN FUNCTION 71 DUF71 -CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0017178 all species →	Molecular Function	diphthine-ammonia ligase activity	Interproscan
GO:0017183 all species →	Biological Process	protein histidyl modification to diphthamide	Interproscan
GO:0005965 all species →	Cellular Component	protein farnesyltransferase complex	Interproscan
GO:0018343 all species →	Biological Process	protein farnesylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERKYLP00000004016.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.