Gene detail

Detailed information of BRAKERKYLP00000005050.1 in Mastigias papua

Genomic Location: not available for this species
NR annotation: XP_048863809.1, germinal-center associated nuclear protein-like, partial [Brienomyrus brachyistius]
Species abbreviation MPAPU · all data for this species · gene families

Sequence

CDS

BRAKERKYLT00000005050

ATGGCGTCTCGGGAAGAGCTAAGAGCCCCTAAAAAGAAAAAGGGTGCAGACAAATTACAGCAAGAGTCACCCTTCCCAATACCGATTGCTAGCTTAACAGGGAGGCCAGCATCAAAAGAAAGATGGTATCACTATTTTGGGAGATTAAGAGGTGACATGGTTGCAGTTGATAGGCTTGGAGACATGACATTTTTGTATAAAATGGGATTCTTTGGGAAAGGCAACTTGTCAAAAAGCAAGCCAGAATTTGATGAAATGGGTAATACATTTGATGAAagatgcaaaatgaaaatgacaaggAGCAATTCTAATAAATTGACTGCAGAAGAAAAGAAATCGAAAGAAATGGAATTTGATGAAATTCATAATGAAAGACTGAAGCAACACAAGCAATGGTGTCTGGAGCAAAGCCTATCTGAGACAGACCTGCCAGCTAAACAATCCAGAATGGAAGACCCTTATCCTGTTGATGAATTCTTGCAATTATCACTTGAAGAGGCTTTCTTTTTGTCATTTGGCCTTGGGTGTCTCACAGTTTCACATGGTGATAAGGAATCGCTTACCATTTGTGAATTATGGAATACATTCAGAGAAATAAAACCAAGATTTGTTGAGACATATGCCACTTATCACTATTTTAGAAGCATGGGCTGGGTTGTTCGTGATGGAATAAGTTTTGGAGCAGATTTCAtgctttacaaaGATGGAATGCCATTTTATCATTCCAGTTATGCTGTGCTCGCATACCTTGTCGATGATGATCAGATCGGAGAGACacatcaatctcatccttggaCATGGAGCTTTTTAACTTGTATGAACAGAGTGGCCGAGCATGTTGCCAAGAAAAGACTTGCAGTCAGGAGACTATCTCAAGGATCTCGTGGAAAAGTGCCAAGCCCGCAAGGAGAAGGCAGATTTACTTTCAAGCCTAGATTAAGCCCAGAGGATTATGCTACCCAGAAGAGAAGAGTTCCATCAAGACCTCGGACAGGTTATCAGAATCAGGGAACATGGTCAGCAGGTGACTTAAGAGGTAAATTGAACACAAGATCACAAAAGGAAGATTTTGGTCAAGGGCAGGACCATGTAGAAAATTCAGACATGGCCAACCCTTTCAAAACAGTTTTATCAACTGCCACCACAGTATCTGACTCAAGTGCTCAATTCAACCCATTTGCGGCTGTTTTACAGCCCAATAGCagttcaatattttcaaaacacattgaCAAATCTAAAAAGATATTTGGAGCTTCTCTGAATGAACAGAAGTCTTtgactgaaaaagattcaaatGAAGAATCAAGCCCATTTTATAGTCAAAAACCAGtaCAAGTACCATTTCCTTTGATTCCATCAAAAAGATTTCAACCAAGCACAGTAGAGAGCAACCCATTTCTTATGGCTTTGAAAGGGAAAGGAACATCTTCAAATATCAAGCCATTGGCAACCAATGCTGTTGTGCCATCATCTTCAGCTCCAAAAGCAGCACTGTCAGGTTCTTCAAACAATCCCTTTAGTTCTGCATTGATGCCATTTTCAAGCAAAGGAGCTGCAACTGATAGTGAAACTAGTGCCATTTTGCCAACAACCTCGGACACAAGTCCAGCATCAATTTTCACTCAAGAGAAGTCACTAATCGCTGAGCTGACGTCACTCAGACTCAAGGGTGTCCCTGTAGAACTGAACAACAAGGAATTCTTGCGTGGCTATTATGAAAAATTTGGTACAGTGAAAAGGGTTTACTCGCATCCGGCCTCAAACTCAGCTATCATTTCTTTCTTAGATCACgATTCTGCTGCAAGAGCCAAGAAAACTGGCACCGTCCTGACAGGTGGGACAACAGTTGACAAGGAGACCCAAGGAGCACCCGATTTTACAGAAGTTAGCAGAATATCAGACGATAAGGACACAATAGCTCGGCATGATGGGGCTTTGATGTCATACGACAGCAGTAGTTTTGCTACAATGATTGAAAGTTTTGTCAATCCACTGAAATTAGTGCCCGCTAGAAGCTCTTTGGAAAAGGGAGAAATGCTTGAGAGGATCGACCAAAAAATTCGAGAAGGGATGAAGACGGAAACAGATTTAAGGAAAGCTTCACATTTTGTTGGAACATGTCCTGATATGTGCCCAGAAAAAGAACGTTATCTTCGTGAGCATCAACAAAGATTGGCGACGTACGAAACGCGGAATGGAATAGACGACCCTGACGCAAGAGGTGGTCAATACCCTGTTGTAGATCCGTCGAAAGTTGTGAAGGAGTACAGCAGATCGTCAGCTGATCAGGAGAAGCCACTTCCGCACGAACTAAGGCCTGGTCACGTGCTGCAACTAACAATGAATTACTTGATGTTACATGTCATGGATTCAGGTGATAGGAATTGGGCAGAATGGTATGATTTTGTGTGGAACAGGACAAGAGGTATACGCAAGGATATTACGCAACAACATCTCTGTGATGAAAGTAGCGTTGATCTCATTGAAAAATGCACCAGatttcataTCATTTGTTCTCATCATCTGTGTGAGGAAGACATCAACGTTTTTGATCCAAAGATCAATAACGAACATTTGACAAAATGTCTTCAAAGTTTGAAGCATATGTACGAAGATCTTTATTTGAAGAAGgGAATTATTTGTCCAAATGAAGCAGAATTTCGATGTTATCAGATTCTGCTAAATCTGAACAATGGTGATATTTTACGGGAAATAACTGAGTTTCGTCATGAAGTCAGAGAATCTCAAGAAGTGAAGTTTGCACTTGAAGTTTTACGAGCATTAAACAGCACAAACTATaTTCGTTCGACAGGATTGTTCATCATGAATAAAGCCTACACAAGTACAGGTGTCAGATCAGTTCCAATACCATTGTCTGATATTGCAAGACTGTTCGCTATTGATGAACTCGATGAGGCCTCCGAGTTTTGCAGTCATTATGGCTTTCAAGTTGATGAGGGCATGGTGTATTTTAGCAAGTCTTCGTACGAAGAACCCGAGTCAAATTTTCTCCCTGTCCGGAATGGTATCATTGACAAGAAACGAAACTCTTCTTTCGGAGAGGTGGTAAATGGCAAGCCACTGCCAAAGCAATGCGATTATTTGCCAACAAGCAGTTTTGATGCTAACGGGCATTACAATGGGAACTACCACACTCTGGCCTTGAGAGGAATACTCAGTGAAAGAGGTGCAGATATGGGTAGAACTGTACCGATAGGCGAAAAGGCGTTGTCACACCCAATGCGGGTTGGCAAAGATGACATCAAGGCCATGTGTTTAGCCATCATAATTCCAGTTGTTAACAAAGAGGTTTATAAGATTTGTACAGATACTATGGAGGATGTGAAAGAGGCTATTACAGCTGTGAATGAGGCTAGTGATGACATCATCGACAATTGTGTGAGGACTGAAGTACAGATTTGTTTAGAGACAGAAATTGAGAAGGAGGCTGTTGAAAGGTTGAGCAGGAATATATATGAAGACCTGAGTAGAAGTGTTGTGGAGGAGCAAATAAAAGCAATTGCTTTTCAAGAATTTGAAGCGGAAAAAGCGAGAAGGGATCATGATAAGAGAATGCTATTGTTTCAGTTAGCAACAGAAATGTCACGTGATCTATTACACGAATTTGTTGGGAGCAGTATTGATGATGTTGCACATGAAGTAATAAGGTTAGAATTCATATTTTAG

Transcript

BRAKERKYLT00000005050

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9WUU9	Germinal-center associated nuclear protein OS=Mus musculus OX=10090 GN=Mcm3ap PE=1 SV=2
O60318	Germinal-center associated nuclear protein OS=Homo sapiens OX=9606 GN=MCM3AP PE=1 SV=2
Q9U3V9	Protein xmas OS=Drosophila melanogaster OX=7227 GN=xmas PE=1 SV=4

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001499 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02778 all species →	tRNA_int_endo_N	tRNA intron endonuclease, N-terminal domain	Domain	Interproscan
PF01974 all species →	tRNA_int_endo	tRNA intron endonuclease, catalytic C-terminal domain	Domain	Interproscan
PF03399 all species →	SAC3_GANP	SAC3/GANP family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006678 all species →	Domain	tRNA intron endonuclease, N-terminal	Interproscan
IPR045107 all species →	Family	SAC3/GANP/THP3	Interproscan
IPR006677 all species →	Domain	tRNA intron endonuclease, catalytic domain-like	Interproscan
IPR005062 all species →	Domain	SAC3/GANP/THP3, conserved domain	Interproscan
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR011856 all species →	Homologous_superfamily	tRNA endonuclease-like domain superfamily	Interproscan
IPR036167 all species →	Homologous_superfamily	tRNA intron endonuclease, catalytic domain-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12436 all species →	80 KDA MCM3-ASSOCIATED PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000213 all species →	Molecular Function	tRNA-intron endonuclease activity	Interproscan
GO:0006388 all species →	Biological Process	tRNA splicing, via endonucleolytic cleavage and ligation	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006406 all species →	Biological Process	mRNA export from nucleus	Interproscan
GO:0070390 all species →	Cellular Component	transcription export complex 2	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERKYLP00000005050.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.