Gene detail

Detailed information of BRAKERKYLP00000005264.1 in Mastigias papua

Genomic Location: chr12:1035328...1053289
NR annotation: XP_002166212.3, dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 isoform X1 [Hydra vulgaris]
Species Mastigias papua · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

BRAKERKYLT00000005264

ATGGTAGAGATGGGACGGATCTTTGTGATTTTGGTTGTTCTTGCTGTCACGATATTTGAAACACAATGCCTGAAAGGTGCATTAACAATTGATGAGATCAACAGATTCAGCAGCGTACTTCAAAGACACAGCCCAGCCAGCCTGGAAGATGCTTATTTTGTTGTCAAGGGTCTGAAATCACTTGGAAAGGAAGTTCCATCTGTTGAGGATGTTTGTAATTTTGCATCAACCAATGTAAAACAAGACATAAAGTCAGTTTTTCAATATTCTGAAATTGTCAAGGCCCTGAAATGCAAGAGTGTTATCAGCAATGTGGCAGGAGTTGATGAGAAAGATGCCAATAGTGTTGCATATGCCATTGCTGCCAGTGTCAATTTGGGTCTGAAAGTTGAAGATTCTGTGGTCCAAGCTCTGCAATCAGCTTTGAAAAATGATGATTCCCCTGCAACTGCAGCCAATGCATTTTATGCTGGCAGCCTTCTTCCAAAGCAGACAAACTTGAAGTTTTTGATCGATCTTGTTGAGGACATTATTGCCCAAGCAGATGAGATTGACAATTCCCTCCTGAAGTTTGAAGGTGGTCTGTCAGTTACCTCAGCTGTCATAAGAGGCATTCTTTCATTGGCTGATGTGCAGGGCCAAATCTCTACCATCACCGCAGAACAGGTCACAAAGTTTGCCCAATACTTCCTCGATCGTAAATATGTTATGGATGTGAAGGGCATTTTTGATTTGTCAACTGCTCTGACACAGCTTTGCAGAAATAAGTTTCAAGTTCCAGTACTGGTCTCTGTTTTCAAGACAGATCGACTTACTGAGAAGAACAGAGTCTTAAAGGTTCGTGTTACAGATGTTATGGATAATTCTATTGCTGATGTAAAAGTGAAAGCTAAGTCAATTACTTCTGCAAGTGGGGACACTATTGCGGAAAATGTTGATTTGTCAAAAGGACCAGAGGAtGACTACatcacaatcaagtctgatatTGCCAAAGCATACATTGCTGCCCACCCTTACCTGTATGACTTTGGCACAGCTAAAAGTGGCATCTATACATTGGCACTTGATGTCCAATTCAACAAGAATTCTGGTGTCTACATTGGAGGGAAAGATGTTGAAGTGAAGGCAAAAGTTGTCTCAAGGTTGACAGTTGCCAGTGTTGATGTAGGCGTTGCTGATAGGGAGCAAGCTGCCTCCTCCAAGCCCATCAAGGTTGCTTTCCCGGACAGCATTACAACAACTCTGGAAGCCGACTACCAGCAGAAAGTTATAATGAATTTTGTACTGAAGGATCTATCTGGAAACGCAGTTACTGCCCATCAGGCTTTCATCAGACTCACCCACATCTCCACTGGTCAGGAGATCTTCTTTATTGCACAATCAGAAGATGATGTCTACAAGTTTATCCTGGACCTTGGTGCAACAGGAAAGGATTCTTTCAATAATTTATCTGGAAAATATAAAATGGACCTTATTGTTGGTGATAAACTGGTTCAAGTTCCCATCAAGTGGAATGTGGCCACATTGTCTCTCACATTCTCAGAAGAACCAAAGAAATCCAAGAAGCAGATGAGAATCACATCGACTCAGCCTGAAATCGAGCACATGTTCCGTGTCCCTGACAAAAGGCCTCCAGTCATCGTATCAAACGTATTCACGGCTCTGATCGCTGTCCCATTTTTAATCATGATTATCTGGTGGCTCAAACTTGGAATAAATGTATCAAATTTCCAATTTTCGATATTCACGCTAATGTTCCACGTTGGTCTTGCAGGAATATTCGCCCTGTATTACCTATTCTGGATAAAGTTTaACATGTTCACAACGCTAAAGTATCTTGGTGTCGTTGGGGGGCTGACATTCATCGGCGGGAACAAACTGCTTGCTGCCATAGCTGCAAGAAGGGAGAGCTCTGAGGCTCCGCAGAATCCAAGATGGCTGATAAAACGTGAGTTATTTTTCCAGGAGAGTACATCTTTAATGTTCCCAAAGATGTACCCAAGTTTTATCTCAGTCTTAAATCTTTCTGTAGGAGATCTTAGTGAGGGAGAATATATTCTTGTTGAAGACAATCAAACAGATGGAAATttcattttgcatcatttcaTATCCTTATTCATTAAAGGAGGTGGAAATGTCTGTCTTGTTGGGTTTGCACAGACATTAGTTCACTATTCAACAATTGGAAAAAAATTGGGGTTGAATTTAGTGTCATGCAAAGAGAATAaccaattgaaattcatagatgGGATGAGCCTATTCCACAAATGCCTGGAAACTGGAATGGCACCATCAGAAGGAACAGATCCTATTGATTTGAAAAGATTATATTTAGAGATAAAGACGGCACTGGATAGCTTCACAGAGAACAAACCATTATTGTTAATTCTGGATGACATCAGTCTGTTGTTGAATTGTGGAGTTTGTAAGCACGCATTAGCCACTTTTATGCAGTATTGCTACCAATTGACGAGGAATAAAGACAAGAAAATATGTCTTCTGTCTTTGGTTCATTGCGACACTGATGTCGATGATGAAGATGCTGTCTATATTCGTGACAGACTTTCGTACCACGCGACAATACACATTTATGTTAAAGGACTGGAGACAGGTTATTCTCGAGACGTGCATGGCCAGGTTGAAGTAGCAAGATTGAAAAAAGATGAACCGCACATCAAGAAAGGAAAGAAGGTAATGCAGTACAAACTAAACGACAAAGGAGTTGAATTTTTTCCTCTTGGAACATCTGCAGCGGTGTTATGA

Transcript

BRAKERKYLT00000005264

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q3SZI6	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 OS=Bos taurus OX=9913 GN=RPN2 PE=2 SV=1
F1PCT7	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 OS=Canis lupus familiaris OX=9615 GN=RPN2 PE=1 SV=3
P25235	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 OS=Rattus norvegicus OX=10116 GN=Rpn2 PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005039 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05817 all species →	Ribophorin_II	Oligosaccharyltransferase subunit Ribophorin II	Family	Interproscan
PF09807 all species →	ELP6	Elongation complex protein 6	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008814 all species →	Family	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit Swp1	Interproscan
IPR018627 all species →	Family	Elongator complex protein 6	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12640 all species →	RIBOPHORIN II	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006487 all species →	Biological Process	protein N-linked glycosylation	Interproscan
GO:0008250 all species →	Cellular Component	oligosaccharyltransferase complex	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0002098 all species →	Biological Process	tRNA wobble uridine modification	Interproscan
GO:0033588 all species →	Cellular Component	elongator holoenzyme complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERKYLP00000005264.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.