Gene detail

Detailed information of BRAKERKYLP00000005404.1 in Mastigias papua

Genomic Location: not available for this species
NR annotation: XP_020896521.1, proline-, glutamic acid- and leucine-rich protein 1 [Exaiptasia diaphana]
Species Mastigias papua · all data for this species · gene families

Sequence

CDS

BRAKERKYLT00000005404

ATGGCGACCTCTTCAAATACAACATCTTGGGCAGTATATAAAGATCTCACTTTGGATGTCATCAAAACTCAACCAGAGTACTTGATTCAACTGATAAGGGTTCTAAAAGAAGAAAGACCGCTAAAGATTAAAGAGAATGCTGAAGAGTTTGctcaaagaatgaaaaaattgttTGCATCCAATGATGAGAAATGGATAGCAATTTGTCTGATGTCAGTATGTTTGGAAGACTTTGATGCAGGGACAATTTGGCAGAATTTGATCTTCTGGATGAGATCGATACAGCAATTAGTAAACTCAAAACCAAATGAGAGTTTTTTGGACCTAATACTAAGTTGCATTCCAAAATTGTTAAAGATTTCCCTAGAATTTGAAGACTTGTCAAGGGAGATATCAATAAACAATATTCAGCCACTTTTGAATAATCTGGTGCAAACAACTGGAACAAAAAGCAGATGTCTCATAAACAGGATTGCAGTATTCAAAGAGTGTATCATTTGTTACCCTGGTCCAACTGGACAGTTTAGGGCACAAATTGAGAATATTTGTCTTGCATTATTAAGTGCCAGTGAAGAAGCATTGAGAAATAATGCCTGTGGGTGTATGGCACTGCTGCCAAGGTGTGGTTCATCAGGAGAGAAGGGCACAAAATTTGCAGAGATTTGGAGCAGACAATTCATGATGGCTATAGAGACCCTAAATTTTCTTATTGACGATTTGTTTGGTAGTAAAGTTGATATAGATGCAGAAGATAACAGAAGTACAAGGACATTCAGATTTAATGAGGTATCCCTTGCTGAGCCTGAACATTCAACAGTAACAGGCTTGAGAATTGAAAGTCTTCTGTTGGTGATTGAGGAGATGTTCAGTTTCAAATTCCCTAGTGTAGTCCACATTGACATTTATGCAGTTATGCGACTGTGCAGCAGgatatttgaaaaagaaattaatcaTCAAGATAGCTCAATAGAAACTGTTTGTTTAAATGCTGTTTTGCCTCAACTGTGGGAGTCAGTGCTATCCCTGATTAATGTTCTTTTGGGCCAAATGGGGTCACTTCTGCTTCCATTTGAAAATACAGTTTTTCAACTGGCGTATCAAGTGTTGGGGGTTCATGAGAAAGGTTCAGACAAAAGGCATGACAATGTAGCTGTTAGGAGACAAGGATACCAGGTACTAGACACTTGGAATATCATGGTCGGCCCCTTAAATTGTGGGTTGCTGCAAAAGATTGTTGAGGTGATTCTTATTGATATACAGCCATGTCTTCAAGTAAACATCTCTGTGGAGAGAaaaaaggaaggaaaacagaagaaaaagaGAGATAGTTCTAAGCTTCAAGCAGAGATACTCCAAGGGGAAATGGCCCTTAAGAAGGTTGACTACAAGGAGGGTAGTGAAATTGCATTTGCTGCTTTAACTTTGCTAGCAACATTGATTAGCACTACTGGCCCAGTAATGAGGGCTGCTCTGATGTTAAAAATTCAAACTGCAGTTATTTCAATATGTGAACTTCTTATGAGGCCATCAAAACAAACGGATTATAACTTTCCAGCCCCTTATGGCAATTACAAATGCAGGGAGAAGCTTCTTCTGTGTGCTTTTCGGCTGACAAATCTTTACCATTATGACAATCCCACTCCATTGTCAAATTTGATAAGAACTTTCCAGGACTATTTTAGTGACCCATCACCCATTATATCAAAAGACAGCAGTGTTTACTTAAGCCTTATTGATAAAATTGCTCATCCTTCTATTCCGGCCTTACGTGAATACAGCGAGGAAGTGGCTATTGATGGCAGTAGATCCCAGAAAGGTGCCAGCACACCTGTATTAACAACTGGCTTGTTTGATGAACTGCATGCAATAAGCCGTCAGGAATCCACAAAAGCATCAAGCTATGGTAGTGAAAAACATCGCCCTGTGAGCTCAGCTGTTGTCAGTAATTTATTCAGTGGTAGGGTATCACTACCAGAAACAGAGAAAGAGAGAGTTTTTGATAATGAAGAGCTCCACTCTACCCAAGAACTTCCCAACAATAGCAATTTGATTCAATTAGAAACTCCTGATAGCAAAAAGCTGGCTGCTTCAAAGGATAAATCATTTGACGTACTGagaaatgaaaaatcagttgAGGAAAGCAGCCATCAGTCTGCATGTCAATACAAAGAGAAGCAGGTTGATTTAAATGTggaaatgaatggaaaattaGCAAAGCGGCCTAAGCTTGATAATAATGCTTATGAGAAGGAAAGGGAACAGAGTATAAGTGAAGATGTGGCTTTGGATAGTGTTACCAGTGCACATATGCAGGGTGCGATGCAGGGTGATCATGAAATGATGGAAGTTACAACAAGTAAAGGTGAACAGGAACTGATAACTAGGTCTGATGATGAATCAAGCATGTTTTTAAAATCATTTGTTAACTCATTCCCAGACAGTGAGTAG

Transcript

BRAKERKYLT00000005404

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005112 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08167 all species →	RIX1	rRNA processing/ribosome biogenesis	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR012583 all species →	Domain	Pre-rRNA-processing protein RIX1, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR34105 all species →	PROLINE-, GLUTAMIC ACID- AND LEUCINE-RICH PROTEIN 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006364 all species →	Biological Process	rRNA processing	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERKYLP00000005404.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.