Gene detail

Detailed information of BRAKERKYLP00000006127.1 in Mastigias papua

Genomic Location: not available for this species
NR annotation: XP_033727819.1, tRNA-splicing endonuclease subunit Sen34-like isoform X1 [Pecten maximus]
Species abbreviation MPAPU · all data for this species · gene families

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8U429	tRNA-splicing endonuclease OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) OX=186497 GN=endA PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009655 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01974 all species →	tRNA_int_endo	tRNA intron endonuclease, catalytic C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006676 all species →	Family	tRNA-splicing endonuclease	Interproscan
IPR016690 all species →	Family	tRNA-splicing endonuclease, SEN34 subunit	Interproscan
IPR036167 all species →	Homologous_superfamily	tRNA intron endonuclease, catalytic domain-like superfamily	Interproscan
IPR011856 all species →	Homologous_superfamily	tRNA endonuclease-like domain superfamily	Interproscan
IPR006677 all species →	Domain	tRNA intron endonuclease, catalytic domain-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13070 all species →	TRNA-SPLICING ENDONUCLEASE SUBUNIT SEN34-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000213 all species →	Molecular Function	tRNA-intron endonuclease activity	Interproscan
GO:0006388 all species →	Biological Process	tRNA splicing, via endonucleolytic cleavage and ligation	Interproscan
GO:0000214 all species →	Cellular Component	tRNA-intron endonuclease complex	Interproscan
GO:0000379 all species →	Biological Process	tRNA-type intron splice site recognition and cleavage	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15323	TSEN34; tRNA-splicing endonuclease subunit Sen34	EC:4.6.1.16	Transfer RNA biogenesis	ko03016	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.