Gene detail

Detailed information of BRAKERKYLP00000006284.1 in Mastigias papua

Genomic Location: chr13:11360642...11372013
NR annotation: EDO46936.1, predicted protein [Nematostella vectensis]
Species Mastigias papua · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

BRAKERKYLT00000006284

ATGGTAGTGACTGGAAAAGGACCAACGAACAAAAGTGCTGCAAAGACTGTGGTTGTTGAGCCGCAAGTGAAAGGACCTATTGGAGTATTGTCCAGTAAGCTTCCTTTGCCTAAAGAAAGTGACAAAAAGCTCTTGATTCAAGAGTCAAAAAATGCGTTTTACAACCGGAGACGGATTCAGATAGCAGGAATTCCTCCTGGAACGCCTGAAAAGgaaATACCTCAGGTTTTATTGCAAGGTTTCAAAGTGGAGTACACCTTTATCAGTGATACTGGTCTTGTGCATGTGCTGTTGTCATCAAAAGAGGAGGCACCCAAAGTGCTGTCCCTCTTGAAAGGGAAGTATTTTAAAGGGAACCTGGTACAGGCATCTTATTCACAAAGTGACTGTCTCTTTTTTGTTGGCAATATTCCATATTTCTACACAGCAACACAATTTAGGAACATGGTTAAAGCTGTTGGGGATATTGAGAGGATTGTACTTGTTAGGAGTGAGATCACTGGTCAAAGTAAAGGCTATGGCTTTGttgaatacaaaaacaaacctaCAATTGATCGGACAGTAGAAGCCattgcaaaaatatcaaaaaatctGAGGGTTGAACAAGCCAACTCAGGTCTAAATGAGTACTATGATCTGCAGTCACAGACACTATATATTACTCAGTTCCCTCCAGGTACAAGGAGTGAGCAGATTGAAGCACTTGTCAACAAACATTGTCAGGTTCCATTTTGCAAGATTCCTCTTGATGATGCAACAGGTAAAGAGTGCAAGTATGCATTGATTGACTGCAAAACATCAGAAGATGCAGAAATGCTTTGGAAGAAGTTGGATGGAGTGGAAATCAATGGTGGAACATTGAGGACCTCCTTTAATCCTCCAGGACGTCTCGCAGCAACCATTCTTGGGGGACAGACACCTAAAAAAGCAGCCACTGAACGTGCTGGAGCTGCATCTCAAGCTCCCGCTCAGAAAACACCTTCCTCAAGTGCTGTTACAGTGAAAAAGGGCCCTGTAGCAGATAGTGCAACTGTTGCAACCAGCAAGCCATCTCCAAAATCTGCTGCTACTGAGAGTTCGACTACAGTCTCATCTCAGAAGAAAGAAGGGTTGTTAGTAGATCCGGCTACAAATAAGCCCCAACATAAGGAAATGAATCAACAGGGATTTTCACCTAGATTTCCCCCTGGACATCCAAGATTTCGACCTCCAAGAGGTTCTTTTGATGCTGATAATCCTAAAAACTTTGGTGGTCCGCCTGATGCTCCCCAAGGAAGAGGCTTTCCAAGGATGATGAATCCTAGAGGCCCACCAGGGCCCTTGCTGCCAAGGGGATCTTTGCATGGTCTAAATTCTAGAATGCCAGAGTCTTTAATGGGATTTCCAAGGCCACCTGACCAGTTTCAGGCTAGGGGTTCAAGACCAATGGGTAACATGAGAGGAGAATTGCGACCTGAGAGACCAAACTTTCCAGGCAATGGACCGTCACGTGGCCCTTTGCCTATTAGGGGTCCTCGGGACCCACTCCAACGCTCAGAGAGACCCCCAGTTCCATCTGAGACTCCCTTTAGGGGGCGGAATCCAGAAATGCGAGGCCAGAGACACCCTGGTCCAAGATTCCCTGCACCAACAGACTTTGAGAAAAGAGGGCCAGAACAGAGTGGGCAGAAAGCAGACAAACATGGGAAACCTGATGGGCAGTTTTTAAGGGAATCACATTCACGAGATGGCGATCGACATATTAAGCCAGATCAACATCATTCTTCTGGGCATCACCAATCACGAGGACATCACCATAATTCACCTGGCAATCAGCATTCTCCAGAGAGTGCATTTGTGAATGAGAGACCTGTGTGGGCAGATGGCCCAAGATCTACTCAAGATACTCGGTATAAAGAACCATTAGCAGATGATGGACGAAGGAACAATAGACCATTATGGGATGATGGTCGAGGAAGAAAAGAGAGAGATTTTGACAGAGAAGGTTTTGATAGAAATAAGGGTGATAATCAAGCTCACAGGTCAGGTTTAAGGTCTCGTGGTCCAGAAGAATTTGAGGGCAATCCTCCTCCCTACTTCCATGGTGAGAGAGACCGCCAAAGAAACCCACAAAAACAGcAGTGGGATGGATTTGAAAGAAGACCACACAGACCTGACTTCCATGCAAGTGATAATTTTAGAGACAGGGATCAACACCTCGGACCAGATTCTCGGAGAGACCCTCCAACAGGACCAGGCGATGGATGGATGCACAGGCATTCTCCTCCGAGAGGGAGACCTCCTCATGAACCACGAGATGGCCAAGATCAGAGAGGACATTTTCATGATAGGCCTGTCTGGAACGAACCGGAACAGGATCGGAGATTCAAGGAGCCCCAGCAGTATGAAAGGTGGGAGCAGAGAGATCCCACTGGTCCAAGACGCCATGATGAACGTAACCCTGATTTCAATCAAGCCAGGGACAATGCACCAAGAAAAGACCACCCACAGTGGACTGATGATTCTTTTAGGCCAGATGACTGGCGCCAGCCGCAGAGGCCGCCGTTAGACGAAATGGCGATGCCACCACGGGAACAATCATTTGGTGCGCCGCCAGATTTTGATAGACGACAAGCTCGGCCGCCATTTGATTCTAGACAGGAGAACCAGGCACCAAGATCTCTAGCTGATCAAGGCCAGCCTGGGCACTTTCAAGGTGGAAATCCTAATGACAGGCAACAGTTTGCAGCATCAAGTCAGGTGTGA

Transcript

BRAKERKYLT00000006284

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q7TPD6	Ribonucleoprotein PTB-binding 2 OS=Mus musculus OX=10090 GN=Raver2 PE=1 SV=1
Q9HCJ3	Ribonucleoprotein PTB-binding 2 OS=Homo sapiens OX=9606 GN=RAVER2 PE=1 SV=2
Q60900	ELAV-like protein 3 OS=Mus musculus OX=10090 GN=Elavl3 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005692 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076 all species →	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR000504 all species →	Domain	RNA recognition motif domain	Interproscan
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15241 all species →	TRANSFORMER-2-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13178	DDX17; ATP-dependent RNA helicase DDX17	EC:5.6.2.7	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.