Gene detail

Detailed information of BRAKERKYLP00000006390.1 in Mastigias papua

Genomic Location: not available for this species
NR annotation: XP_031549501.1, E3 ubiquitin-protein ligase RNF220-like isoform X2 [Actinia tenebrosa]
Species abbreviation MPAPU · all data for this species · gene families

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6PDX6	E3 ubiquitin-protein ligase Rnf220 OS=Mus musculus OX=10090 GN=Rnf220 PE=1 SV=1
Q8HXD5	E3 ubiquitin-protein ligase RNF220 OS=Macaca fascicularis OX=9541 GN=RNF220 PE=2 SV=1
Q5VTB9	E3 ubiquitin-protein ligase RNF220 OS=Homo sapiens OX=9606 GN=RNF220 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005774 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF15926 all species →	RNF220	E3 ubiquitin-protein ligase RNF220	Family	Interproscan
PF13923 all species →	zf-C3HC4_2	Zinc finger, C3HC4 type (RING finger)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR031824 all species →	Domain	E3 ubiquitin-protein ligase RNF220, middle domain	Interproscan
IPR052443 all species →	Family	E3 ubiquitin-protein ligase RNF220-like	Interproscan
IPR001841 all species →	Domain	Zinc finger, RING-type	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR040178 all species →	Domain	E3 ubiquitin-protein ligase RNF220, RING finger	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13459 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016567 all species →	Biological Process	protein ubiquitination	Interproscan
GO:0061630 all species →	Molecular Function	ubiquitin protein ligase activity	Interproscan
GO:0004842 all species →	Molecular Function	ubiquitin-protein transferase activity	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERKYLP00000006390.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.