Gene detail

Detailed information of BRAKERKYLP00000006427.1 in Mastigias papua

Genomic Location: chr13:193464...210524
NR annotation: XP_047122819.1, ATP-dependent RNA helicase DED1 [Hydra vulgaris]
Species Mastigias papua · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

BRAKERKYLT00000006427

ATGCCTCCACCATGGAAAATGCTGAATGGATCTGCAAGTACTGTCACAAGCAGTCTACCTGATGCGGAAAATAAGTCCCAAGATGGAGGTCCCGCAAATGCCATTTCACATTCAACACCATTCGCTAAACAGTCTGACAAGGTACAACATTCAGATGCTGCTGAAACTAATCGAAGTTGGTTCACACACCAAGTGAAAGTGCTATCTTGGCCTGCCAATGCATCTGAAGATTGTCTACGAGATACATTTTCATTGGTTGGAGAAGTTGTCAGAGCAAAAGTTTTGCCACCAAAGGACGAAAGGGATACAACTATTTGCTTCGTCTCATATTCCAATGGTGAAGAAGTGGATGCAGCAGTTAGGCAGTTTCATAATCATGAAGTAAATGGAAAACAAATTAAGGTGGAAAAAAATGTCTCGAGAGAAAGTCCTGCTAAGCAGCAAAATGGTAAAAGGTTATCTGCTTCTTCAAACCAACTTAAAGTATACTCTTGGCCTGCGGAATTACGTGAGGAGGAACTGAGGACTGTTTTCTCAAAGGCTGGCAATATCGACAGTGTTCGAGTTTTGCCCGCAAGAGATGGACGAGATACCACATTGGCATTTGTATCATTCTCATCTCAAGACAGTATGCAATCAGCATTATCTACCTTTAATGGTTATGAGATTGAAGGGAAAAGGCTAAATTTACAAACAGATGACAGGAGCTCATCTTCTACAGATATTTCTCAACAAGACCGAAGGAAAGGCAACCCCCCTTCATCAAGTATGACAAATAatacaaatcaaatcaaagttCTTTCCTGTCCAGCATCTCTATCGGAGGATGAATTAAAGGATGTGTTTGCTTCAGCTGGCATTATCGAGCGAGTTAAAATTCTTCCAGCAAGAGAAGGCAGGGATATTACTTTGGCATTTGTCACCTTTAGTTCGCATGCGGAAACAGTCTCCGCTGTCGAACAATTCAACGGTTTTGAATTAATGGGAAAGAGATTGAGAGTTATTAGCGAGGCAGATAGTTCAATGGAGCGAAGTCGTAATCAACTTTCAAGTAATTCCCAAGAAGGAAAATCTAATGAGATTAAGGGGAGACCCTGGGGCTCAGATTTTACTGCTAATGGAAGACCCTGGGATTCAAATGCTATTGTTAATAGCCAACCAGCAGGAGCACAACAATTTACTAAGACATGGGGGGTCAAAGCACGAGGACCGGTCACCTACATACCACCACCCCCTCTAGAGGAAGAATCAGAAATCTTCAGAGATACATCACATACTGGAATAAATTTCcaaaagtatgaaaatattCCTGTGGAAGTTACTGGTAAAGATAAACCACAGGGAATAGATTCATTTCGGGACGCTAAGCTGCATTCAATTTGCGATGAAAATATTCGTCGTGCTGGTTATGATGTACCTACTCCAATCCAGAAGCACGCTTTACCTGCAATTCTCAATGGTAATGACGTTATGGCTTGTGCACAGACGGGATCAGGAAAAACGGCTGCTTATCTTCTACCTGTGATATCGAATTTACTTACTGCTGGGTTCAATGACCAAGATGTTGGTGAAATAGCATATCCTAAAGCACTTGTCATCGCTCCTACAAGGGAATTGGCGGTGCAGATATTCTTAGAAGCACGTAAGTTTGCCTATGGGAGCAGTCAAAGAATCATAGTTATCTATGGTGGAGTGAATGTCTCGCATCAGTTGAGTAAATTGTCTGATGGTTGTGATATACTTGTTGCTACTCCTGGAAGATTGAGCGATTTTATTAACAGAGGAAAGGTTTCATTGTCTCAGATTCAATACCTTATTTTAGATGAAGCAGATCGTATGCTTGACTTAGGTTTTAACGAGGTCATTAGAGAAATTGTTGGGTCATCCAATATGCCTCCAAAGTGTGAAAGGCAAACTCTTATGTTAAGTGCAACATTTCCTGAAAAGATTCAGTTACTTGCCGCCGAGTACCTAAATGATTATTTATTCATTACTGTTGGATTTGTTGGAGGAGCGAGCACAGATATCGTTCAAAGTATTCTCGAAATTCCTGCCTCAGAGAAGCGCACAAAATTGGAGGAAATTCTTCTAGAATCAGGAGGGGACAGAATTCTTGTTTTTGTCGAAACAAAAAGAAGTGCAGATTTTCTTGCAAGTTTTCTTTCTCAACGAAACTTTCCAACAACAAGCATAAGCAGCGATCGATCCCAGGAAGAGCGGGAATGTGCTTTGAGGGATTTCAGATCAGGAAAGGCCCCGGTCTTGATAGCAACTGCTATAGCTGCCCGGGGATTGGATATCGCCGATGTTAAAATGGTTATTAATTTTGATCTACCCATGGAAATTGATGAATATGTCCATAGAATTGGGAGGACTGGCCGAATTGGAAACCAGGGTTGTGCTATCGCATTCTTTGATCGCGGGAGGGATAGCAGATTAGCAAGAGGACTCATAAAAGTTTTATCGAAGTCAATGCAAGAAGTTCCTGATTGGCTGGAAGAAATAGCAATGTCTGCTGTTGGAACTAAGTATGGCCCCGGTAGTGGGCAGTTTTCATCTAGAGACAAAAGAGCGGTACTTATTTAG

Transcript

BRAKERKYLT00000006427

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q3MSQ8	Probable ATP-dependent RNA helicase DDX4 OS=Pelophylax lessonae OX=45623 GN=ddx4 PE=2 SV=1
Q5W5U4	Probable ATP-dependent RNA helicase DDX4 OS=Bos taurus OX=9913 GN=DDX4 PE=2 SV=1
Q9NQI0	Probable ATP-dependent RNA helicase DDX4 OS=Homo sapiens OX=9606 GN=DDX4 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000960 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076 all species →	RRM_1	RNA recognition motif	Domain	Interproscan
PF00270 all species →	DEAD	DEAD/DEAH box helicase	Domain	Interproscan
PF00271 all species →	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504 all species →	Domain	RNA recognition motif domain	Interproscan
IPR001650 all species →	Domain	Helicase, C-terminal domain-like	Interproscan
IPR000629 all species →	Conserved_site	ATP-dependent RNA helicase DEAD-box, conserved site	Interproscan
IPR014001 all species →	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR014014 all species →	Domain	RNA helicase, DEAD-box type, Q motif	Interproscan
IPR011545 all species →	Domain	DEAD/DEAH box helicase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47958 all species →	ATP-DEPENDENT RNA HELICASE DBP3	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003724 all species →	Molecular Function	RNA helicase activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0007276 all species →	Biological Process	gamete generation	Interproscan
GO:0030154 all species →	Biological Process	cell differentiation	Interproscan
GO:0043186 all species →	Cellular Component	P granule	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERKYLP00000006427.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.