Genomic Location: chr13:14378632...14389832
NR annotation: XP_025110414.1, UV excision repair protein RAD23 homolog B-like [Pomacea canaliculata]
Species Mastigias papua · all data for this species · gene families
| CDS |
| BRAKERKYLT00000006981 |
| Transcript |
| BRAKERKYLT00000006981 |
| Protein |
| BRAKERKYLP00000006981.1 |
| UniProt accession | Description |
|---|---|
| P54728 | UV excision repair protein RAD23 homolog B OS=Mus musculus OX=10090 GN=Rad23b PE=1 SV=2 |
| Q29RK4 | UV excision repair protein RAD23 homolog B OS=Bos taurus OX=9913 GN=RAD23B PE=2 SV=1 |
| P54725 | UV excision repair protein RAD23 homolog A OS=Homo sapiens OX=9606 GN=RAD23A PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0006633 (this species only) · gene tree & orthology |
| Ubiquitin family | ULD|UBL|NEDD8 · all ubiquitin genes in this species |
| Ubiquitin family | UBD|Alpha-Helix|UBA · all ubiquitin genes in this species |
| Ubiquitin family | ULD|UFD/UBQ|UBQ_Other · all ubiquitin genes in this species |
| Ubiquitin family | ULD|UFD/UBQ|UBQ_PIM · all ubiquitin genes in this species |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF09280 all species → | XPC-binding | XPC-binding domain | Domain | Interproscan |
| PF00240 all species → | ubiquitin | Ubiquitin family | Domain | Interproscan |
| PF00627 all species → | UBA | UBA/TS-N domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR004806 all species → | Family | UV excision repair protein Rad23 | Interproscan |
| IPR000626 all species → | Domain | Ubiquitin-like domain | Interproscan |
| IPR015360 all species → | Domain | XPC-binding domain | Interproscan |
| IPR015940 all species → | Domain | Ubiquitin-associated domain | Interproscan |
| IPR036353 all species → | Homologous_superfamily | XPC-binding domain superfamily | Interproscan |
| IPR006636 all species → | Domain | Heat shock chaperonin-binding | Interproscan |
| IPR009060 all species → | Homologous_superfamily | UBA-like superfamily | Interproscan |
| IPR029071 all species → | Homologous_superfamily | Ubiquitin-like domain superfamily | Interproscan |
| IPR041811 all species → | Domain | RAD23A/RAD23B, UBA1 domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR10621 all species → | UV EXCISION REPAIR PROTEIN RAD23 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0006289 all species → | Biological Process | nucleotide-excision repair | Interproscan |
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
| GO:0003684 all species → | Molecular Function | damaged DNA binding | Interproscan |
| GO:0043161 all species → | Biological Process | proteasome-mediated ubiquitin-dependent protein catabolic process | Interproscan |
| GO:0005654 all species → | Cellular Component | nucleoplasm | Interproscan |
| GO:0005829 all species → | Cellular Component | cytosol | Interproscan |
| GO:0031593 all species → | Molecular Function | polyubiquitin modification-dependent protein binding | Interproscan |
| GO:0043130 all species → | Molecular Function | ubiquitin binding | Interproscan |
| GO:0070628 all species → | Molecular Function | proteasome binding | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K10839 | RAD23, HR23; UV excision repair protein RAD23 | - | DNA repair and recombination proteins | ko03400 | deepkoala |
Genes whose expression across the transcriptome samples of Mastigias papua tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Mastigias papua, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
