Gene detail

Detailed information of BRAKERKYLP00000007021.1 in Mastigias papua

Genomic Location: chr14:2384589...2407416
NR annotation: XP_002156793.1, nucleosome assembly protein 1-like 1 [Hydra vulgaris]
Species Mastigias papua · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

BRAKERKYLT00000007021

ATGGCGGACGTAATCGAAGAAGTTCCGTCTGGTGAGGAAGCCGATTTTGAAGACgatagaaatgaaaatgaaggacaaagtgatgacaatgGAAAGAAGAATAACATGGCTGGCATGCTGGATGTAATAAACAAAATTCTTAATAAAAAGATTAAAGATACTGGACAGAGTGTGATATTGTCAAAATATAAAGAAGGTAAGAAAAGAAGATTAGAGCAAGAGAAAGAGGCACTTGCAAAAAAGGCCAAGCTCCAAAGCAAAGCTGAATTTAGAGAGAAAAACCATGTTGTTCCAGATAGATCCAATGCAGAGAAGGAAGTAGCACTGCGAAGGATAGGAACTAAAGGAGTGGTTAAATTGTTCAACGCTGTTGCAAAACATCAAAAAGAAATGGAGTCGAAGTTAAAGAAAGCTCCAACAGAAGTCAAAAGAGACAAAGTTATAGGCTCAGTTTCCAAGTCATCATTTCTAAATATGCTAAAGACAAACTCTTCTTCGAAAGAAGCAGGAAAAGGATTAGAAGAAGAACCCCAGGAAGAACACGAGGTTGAAAagattgaaaaggaGGCTCCTTCGTGGGGTATTTTGCGGGATGACTTTATGATGAGCTCGAAAATGAAAGACTGGGACAAAAGTGATAGTGACGTAGACGATGCTAAGGAAGAACTAGCATCCGCGGAGAGTAGTGAAGAGACGGGAGACAGTATACAAATTTTTTACAGAATGCCCAAGGGAAAGAAGCCAGCCATTGACTCCAGTGATGGAGAGGATGACCATGCTGCTGCTAATATGAATGCACAAATTGCCCACTCGCTAGCAACAAATCCTTTGTTGCTGCAAGCTGTACAGAATAAACTGAATGGTCTTGTTGGAACATCTTCTGGATACATTGAGAATCTACCAAAGTCAGTGAAAAGGCGATTAAATGCCTTGAAAAACCTTCAGGTCAAGTATGCAGAAATTGAAGGGAACTTTTATAAGGATGTCCATGCCCTTGAGATGAAGTATGCTAGTCAGTTTGAGCCAATTTACACTAAGAGAAAGGACATTGTTAATGGAAGTTATGAGCCAACAGATGAAGAGGCCAAATGGGTTGAGCCGGGACTTGATGAAGATGAGGACAAGGAGGAGGATGAATCAAAGGAAGGTGAAACCAAGGATAAGGTTGAGGCCAAAGAAGAGGACAATGAGAAGAAGGTAAAAAAGATGGAAACTGGAGCTGATAAGCTTGCAGAGGAACTGAAAGACAAGGCAACTGTGGAAGATGATAAGGAGGAGGAAGAGACAAAAGGAATTCAAGAATTCTGGTTAACTGcaatgaaaaatgttgaagtCATCAATGAAATGATTCAGCCACACGATGAACCAATTCTAGAACACTTGATCGACATGAAGCTGATTTTGAACGGAAAGAAGGAGAGTGATGGCGagaatgatgaagaagatgaactgGGATTTGCTCTAGAGTTCCATTTCAGCTCCAACGATTATTTTTCAAACTCAGTTTTGACAAAGTCATATAAGATGCAGTGTCATCCAGATAGTGATGACCCATTCTCATTTGACGGCACAGAAATTACAGGATGTACCGGATGCCATATTGACTGGAAAAAGGGTAAAAACGTGACGCAAAAGGTGgtcaaaaagaagcaaaaacacAAAGCACGTGGCCAAACGAGAACAATAACGAAGACTGTAAAGAATGactcatttttcaatttcttcgaCCCACCAGATGTCGTATCTACTCATTTCTATGCGCAGGAAGAAGATACAGAAACTTTATTAGCCGCTGATTTCGAGATTGGACATTTCATGAGAGAGAGGCTTATTCCTCGGGCGGTTCTCTATTTCACGGGTGAAGCGATCGACGACGAGGGAGATGATGACTTCGATGACGGTGACGATGATGAGGGAGATGACGAGGAATTAGAAGATGACGATGAGGATCCTGATTATAAGCCTCAGGATGCGGAAAAGCCACCAGAATGCAAGCAGCAATAA

Transcript

BRAKERKYLT00000007021

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q4U0Y4	Nucleosome assembly protein 1-like 1-A OS=Xenopus laevis OX=8355 GN=nap1l1-a PE=1 SV=1
Q28EB4	Nucleosome assembly protein 1-like 1 OS=Xenopus tropicalis OX=8364 GN=nap1l1 PE=2 SV=1
P28656	Nucleosome assembly protein 1-like 1 OS=Mus musculus OX=10090 GN=Nap1l1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004433 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07890 all species →	Rrp15p	Rrp15p	Family	Interproscan
PF00956 all species →	NAP	Nucleosome assembly protein (NAP)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002164 all species →	Family	Nucleosome assembly protein (NAP)	Interproscan
IPR012459 all species →	Family	Ribosomal RNA-processing protein 15	Interproscan
IPR037231 all species →	Homologous_superfamily	NAP-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11875 all species →	TESTIS-SPECIFIC Y-ENCODED PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000785 all species →	Cellular Component	chromatin	Interproscan
GO:0003682 all species →	Molecular Function	chromatin binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006334 all species →	Biological Process	nucleosome assembly	Interproscan
GO:0042393 all species →	Molecular Function	histone binding	Interproscan
GO:0006364 all species →	Biological Process	rRNA processing	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERKYLP00000007021.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.