Gene detail

Detailed information of BRAKERKYLP00000008766.1 in Mastigias papua

Genomic Location: not available for this species
NR annotation: CAH3120432.1, unnamed protein product [Porites lobata]
Species Mastigias papua · all data for this species · gene families

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6DFS2	Replication protein A 32 kDa subunit OS=Xenopus tropicalis OX=8364 GN=rpa2 PE=2 SV=1
A1L2H9	Replication protein A 32 kDa subunit-B OS=Xenopus laevis OX=8355 GN=rpa2-b PE=2 SV=1
Q6IP18	Replication protein A 32 kDa subunit-A OS=Xenopus laevis OX=8355 GN=rpa2-a PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006404 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08784 all species →	RPA_C	Replication protein A C terminal	Domain	Interproscan
PF01249 all species →	Ribosomal_S21e	Ribosomal protein S21e	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012340 all species →	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan
IPR014892 all species →	Domain	Replication protein A, C-terminal	Interproscan
IPR001931 all species →	Family	Small ribosomal subunit protein eS21	Interproscan
IPR036390 all species →	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan
IPR040260 all species →	Family	Replication factor A protein-like	Interproscan
IPR036388 all species →	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR018279 all species →	Conserved_site	Small ribosomal subunit protein eS21, conserved site	Interproscan
IPR038579 all species →	Homologous_superfamily	Small ribosomal subunit protein eS21 superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13989 all species →	REPLICATION PROTEIN A-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003735 all species →	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005840 all species →	Cellular Component	ribosome	Interproscan
GO:0006412 all species →	Biological Process	translation	Interproscan
GO:0000724 all species →	Biological Process	double-strand break repair via homologous recombination	Interproscan
GO:0000781 all species →	Cellular Component	chromosome, telomeric region	Interproscan
GO:0003697 all species →	Molecular Function	single-stranded DNA binding	Interproscan
GO:0005662 all species →	Cellular Component	DNA replication factor A complex	Interproscan
GO:0006260 all species →	Biological Process	DNA replication	Interproscan
GO:0006289 all species →	Biological Process	nucleotide-excision repair	Interproscan
GO:0035861 all species →	Cellular Component	site of double-strand break	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10739	RFA2, RPA2; replication factor A2	-	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.