Gene detail

Detailed information of BRAKERKYLP00000008964.1 in Mastigias papua

Genomic Location: not available for this species
NR annotation: KXJ24908.1, putative skeletal organic matrix protein 5 [Exaiptasia diaphana]
Species abbreviation MPAPU · all data for this species · gene families

Sequence

CDS

BRAKERKYLT00000008964

atgcatGGAACAACAAAACATTTACTAACAACCGTAGTGGTAATTCTGTACTTTACAACAACATGTGCAAATATCACGTGTGCACCACAGTGTCAGATAACTAAATACACAATAAAGTGTATTAATAAAAACTTAACAACGATTCCAAAGAGCCTTCCACGGAGTGCTAGAAGAATAAATTTATCCAACAATCCAAATATTAACATATCAAGTTGCTTCTTTCTCCAGTTTAAAAACTTGTTCATTTTGACATTGACTAGATGCGGACAGAGAGGTCCATTCTATTTGCCACATACAGTTAGAGAATTAAGGCTGGATGACAACGAGTTTACTATAGATGCACTAAGACAAATGCTATCAAAACTAAAATCACTGAAATTGATGAGTGTAGCAAGGAACAATCTTCATACATCGGACATAAAGTCACTACTCAGCATTTTGCCGAAAGGATTGGAACACCTTACCATAAATGGCAATGAACTGAAAAAGTTGACTGCAAGGGGGATGCACccattcacgaaaatcaaaacattaaaGATCGAGCAATGCTCTCTAGAGAGTATCGAAAAAGGTGCATTTGATACTTTGAGGAGATTAGTTGAACTTCGACTCGGTGGAAACATTTTACTCTCTTTGCCAGACAATCTGTTTAAGTTCAACTCAAAACTACATAAAATATGGCTAGGTGagaataaaattgaagaatttaaTGCGACTAAGCTTTGCCTAAATGATGTACAAGACTTAAGGCTTGCAAACAACAGAATAAGAAACTTTGATATACGGAACCTGAGACCAAACATTGTAATGCTACATGGCAACAAGATTCAGAAATTGGAATATAATATGTTCAATAACAATACAGGTGTACTTGCACTAACGCTTAATAATAACAAAATCCAGCGCATCTCAAGATACGCATTTCATGGGGTCGAAGGTATTGGTAATCTTCTGCTGAACAACAACAGCATTATGTCGTTACCAGACGACCTGTTCGCAGAGATGACAGtcaattatatatttttgcaaaataacaaGTTGTCAAGTCTTAATGGGACATTCCATGGCATGAAGACATTTCCTTATATACTGATGCTTTCGGGAAACAGAGGCATCACGTCATTGAATGGCAGGGATTTCAGAAGTCTACCACATAAATCAAACATTTACCTTAACTGTGAAAGGTTCACAAATATCTCGAATCTATTTCAGCTGAAGACTAAAGTTCACTGCTCTCCGAAGGCTGATGAAGTTATTGAAACATCTGTTTGTGATGGACTTTCGTGCAATGGATATGAATGCAAACGTTTATGGCCATATGAACAGTTTAAGTGCATGGCTTGCAGACCAGGCTATAAAAATGTATGCGTTATGACCCACAATTATAATAGCAAATGCATTGAATGTCCTCCAGGATCCTACTACCAAGATGAGCCGGCCAGTATCACATGTAAGACATGCAGACCAGGCCAGTTTGTTCCACCAGAGCATGGCCCCGGAAAAAGTGCCTCTGATTGTCAGACTTGCCCAGAAGGAACCAACACAGCAATTCTAGCAGGAACACGAGCCTGTAATTGCCTTAATGGATATTCTAGAAGGTATAGATTTGGTCCATGCCTAAAGTGCACAGAAAATGGGTTTAACTGCAGTCAAGATTATCcaattcttcaaaatggatTCTGGATGACATGGCAAGGCACAACGCTAGAACATACTGCAGCAGTGGGAAACAAACATGTGACACATAAGACTTGCGAAAACGTCTACAAGGCATACATCAGAAACCTCGATATAACAGATGATAGTTATAACAGGGCAACGATGCACTTCAACTGTCAAATGCCACTGCCACTAAAATGCCCTATGCACAGATCGTGCTTAGGGGGTATACAGCCAAGATGTTTTCTAGGATATACTGGAGTGTTATGTGCAGTGTGCAAACACGGCTATACTCGCCAATTCAATCAATGCGTTCAGTGTCCTCAAAAGTTTTGGGCTGCTACTCATCTGATTGGCTGCATGGCATTATTCCTTATAATTGTTTTCCTAATATCATGGGCAGACAACAGTGGCGTGGTAAGTGCAAGGAATTATGGTCGGAAACCAACTGATCATGGTACGTATGGTGACATAATTCTGTCTAGTCTCAAAATTCTAGTTGGACATTATCATGTGTTAATATGTATCGTAAACGCATTATCAAAAGTTCACTGGCCTGAAAACTTAAAGCCATTCATTAGCATTCTGCAATACATACAGTTGGAAATAATCAATTTTACGTCACTACGATGTATCAACTCAGAATGGAACATCAATGCTTTTGATGAATTATGGATTACtcttatcattatcatcacaataCCATTGCTCGCCGTCGTCTATTATTTCATCAGCGCATCATGCATTTACTACACATGCTCATGTCCATCAGAAGTTAAAAGAAGAAGGTTTACCTATGCAAGAAACTGCATAAGATATTTTGCACTGTTTCTATTCGTAGCCTACATAGTCATTACAACAAAGATCATTGGAATATTGCCAATCAGTTGTCATTCGTTTTGCACTGCAAAACAAAATGGCATTTGCGTGCATTCAATGTCATTTCTTCGATCTGACTACAGTATTACTTGTCCAACAATGAAGTACAATAGGGGAACCTTGACCACTGCGTACAGCAGTCTCATTCTTCCAGTGGGCATGCCCATTTTCTTATGGTTCCTACTATGA

Transcript

BRAKERKYLT00000008964

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000105 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13855 all species →	LRR_8	Leucine rich repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050541 all species →	Family	Leucine-rich repeat and transmembrane domain-containing protein	Interproscan
IPR001611 all species →	Repeat	Leucine-rich repeat	Interproscan
IPR032675 all species →	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR003591 all species →	Repeat	Leucine-rich repeat, typical subtype	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24369 all species →	ANTIGEN BSP, PUTATIVE-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0009897 all species →	Cellular Component	external side of plasma membrane	Interproscan
GO:0035025 all species →	Biological Process	positive regulation of Rho protein signal transduction	Interproscan
GO:1905573 all species →	Molecular Function	ganglioside GM1 binding	Interproscan
GO:1905576 all species →	Molecular Function	ganglioside GT1b binding	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERKYLP00000008964.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.